RNA id: AMCG00020864


Basic Information

Item Value
RNA id AMCG00020864
length 2691
RNA type mRNA
GC content 0.61
exon number 15
gene id AMCG00020864
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35277860 ~ 35287818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGAGGACCAGGGCTTTGCCGGGGACTGCTCCCAGGTCTGTCTGGACTCTCAGCAGCCTGAGGACTCTGCTGGAGAGACCCTGTGTCCCTCCCTGGAGCTGCTGGCACTCGACGGGGACCTGGAGGCCAAACTGCGGGGAGATGACAGGGGGGAGAAGttagaagaggaggaggagggatgggGGGTGGATGCTTTGGGGAACGGGGCCACGGCGGGATCGGGAGAGTCAGGAGAATCAGACATGGAGGATGTTCCCTTTGAGGAGCTGGAGTGTGGCTGCGAGATGGGGGAGGTGGCCGGGCTGCAGGGCCTGGGAGACTCGGGGATGGGAGACCCAGGCAGTGGCAGTGGCCCGGACCCCAGCACCCCTGCCTCCTTCTGCTCCCGCACAGAGAACAGCTCCAGTGACGAACTGGACCAGTCCAGCGGGGCAGCCAGCCTGGGAGATGACCTTGAGATGCAGTGGACTGAAAATCCCTTGTCCCAGGACaacccaccccctcctcccaccCCAGGGCAGGAGCTGCAGGCCTTGGGGCAGGACGGGGACTCGGGAAAGGGGGTGACCTCCTTATCTGGGTGGGTCCCGGGGGCCCACAGAGGTCTGGAGTCCCTGCCAGAGGTGGCCAGGTCTGACAGGATCCAGGAGGCGGGGCAGCGGTTGGACAGTCCTGAGGAGACAGAGCGCACTGACCCCCCGTCTGCCTCCGCTCTCCTGGGCCCGGCCCATGGGGAGATTGACCAGGACGAGGGTAATGAGCCTAACGAGCCTAACGAGGAGCCTGTGCCTGTCAGCTCCGATGGCTGTCAACCTGAGGGAGGGATAATTGAGGAGTGTCCTTCCCCATTAGAGTCTGAAGAAAACACAGAGGCAGAGTACGTAGCTCCACCCACAGAAGCTCTGCTCCACGAATTGAGCGAGGCTGCCACCTTGCTCTCATCGGAGGAGGCCGAAAATCCCACTCAAGGTCCGGATCTGGGGGAGGAGCCAGAACCTGCAGGAGCCTGCGAAGGCACAGGGATCGCAGACTGTGTAGACGGTGCAGATTCTGCTGGGGGCACAGGGTCCATGGGGGCTACAAAATCTCTAGGAACTAAAGCCGGCATGGGAGTCCCAGACTCAGAGGCCGCCGGGTCCCTCGGGAGCTCGAACAAAGAGCTCAAGCAGCAAGAGGAGGGGCAGCAGCAGGAGGTAGCAACGGCGGCAGACGGTGATGGCTCAGAAGAGGACAGTGAAGTGGAGGGGGTGGTTCCAGCAGCTGGAACACAACAGGCTGGGGCTCTGAGGGACAGAGAGTCCAAGCAAGAGGAGGCAGAGgcaggagaggaaggggagaaagaAGAGACagcagaaggagaggaagggaaggaaggagagaaggCAGAGGAAGGACAGGAGGAAGAGCAGGCACCTGCTAGAATGGGCTGTGAGGAAGAACAGCAGGACCAGCCAGAGAGTGACCTGCAGACAGTGGAGAAGCCCAGGGGCCCCGGCGGCCCCCAGCTAAACGGCAGCCATGTGGACAGAGAGGCAGCGCGCAGACTGGCCGAGCGGCTCTACAGATTGGAGGACTTCCGGCGAACAGATGTAGTGAAACACCTGGACAAAGACAATGAGTTCAGCAGTGCCGTTGGCGAGGAGTACCTGAAGCTTTTTGATTTCTCTGGGCAGAATCTCGACCAGGCGCTGAGGTCCTTCCTGAAGGTGGTGGTTCTGATCGGAGAGACGCAGGAGAGGGAGCGTGTGTTGCAGCACTTCGCACAGCGCTTCCATCAATGCAACCCTCACAGCTTTCAGTCCTCAGGCGCGGTGCTCAGTCTGACCTGTGCCAACTTGGGTAAAGCCATGACCGTCTCAAGCTTTGTTTCCAATTTGGAAGGGATGAATGAGGGACAGAGCTTCCCCAAGGACCTGCTGAAGGGTCTGTACCACGGCATCAAGAGCGAGCCGCTGGAGTGGGCAGTTGGCGAGGAGGAACTGAAGGGCTCGCTGATGTTGCCAGGGGACTGCGCTGTGGATGCACCACTCCGCTCCAAGTGCAACCCCTTCCAGGACATTCCCCACGACGCGAAGGCCACCGTCTCCCTGGGGGAAGAGAAGCTGGAAGACATTCTACGCGGTGCTGAAGGGCATGGTGCTGACGAGTACCGAATGGACTGGCAGAGCTCAGAGGAGGTGGTGAGTGTCCACCACGCGCTGGCTGAGAGGGCCGCCGACTACACCAAGAAGCAGCATGTGTTCCGCCTGCAGACCGCAGACTGGAGAGTCTTCCTCTTCCAGGCCTCGAAGTTCACCAGACCCATCCTGCCGGCCACCCAGTCCCGGCACTCCACGCTGCTGGGCGCGTGGCGGCGCCtgggcaccacagacctggaCCTCTTCGACAGCGATGTGTGTGACGCCGTGGAGACGGACGGGGAGGAGCTGAAGAAGTCCCACTCCAGCCCCTCCCTCAACCTGGACTTGCCCACGCCCATCGTCAAGGTGAAGCGCAACATCTCTGAGAGACGCACCTACCGCAAGATCATTGTGCCGCGCCGCCGCAGCAGGGAGCTGaCAAACAAGCTTTACTTCATCTTCTCGCTCTTTCTCGCCAAGTCTCGCAACACTTTGGCCAACCCCCCTGCACTTCCCCGGGGAGGCTGGAGAGCCACAGCAACAGGGGTGAGGGAGACAGGGCCTTGA

Function

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82709 lncRNA upstream 107585 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 128442 35148214 ~ 35149418 (+) True AMCG00020855
TU82612 lncRNA upstream 251631 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 527709 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 528517 34749127 ~ 34749343 (+) True G65996
TU82810 lncRNA downstream 145450 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 265085 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 428227 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 470290 35758108 ~ 35761032 (+) True G66319
TU82931 lncRNA downstream 480423 35768241 ~ 35768571 (+) True G66325
AMCG00020859 mRNA upstream 102247 35173026 ~ 35175613 (+) True AMCG00020859
AMCG00020857 mRNA upstream 105759 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020856 mRNA upstream 116764 35158674 ~ 35161096 (+) True AMCG00020856
AMCG00020855 mRNA upstream 129373 35147603 ~ 35148487 (+) False AMCG00020855
AMCG00020858 mRNA upstream 130318 35146077 ~ 35147542 (+) True AMCG00020858
AMCG00020863 mRNA downstream 66888 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020868 mRNA downstream 88452 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020869 mRNA downstream 117325 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020872 mRNA downstream 128234 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020875 mRNA downstream 439934 35727752 ~ 35736989 (+) True AMCG00020875
TU82706 other upstream 112875 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 269538 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 490386 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 866240 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1218395 34059111 ~ 34059465 (+) True G65830
TU82915 other downstream 459407 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 579575 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 966881 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1626997 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 5033295 40321113 ~ 40321821 (+) True G67108

Expression Profile