RNA id: AMCG00020865


Basic Information

Item Value
RNA id AMCG00020865
length 3611
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00020865
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35361459 ~ 35372256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCCCGAAAAGGAACTCAGCCGCTCACAGAGGTGGTGGGCGGGGAAAGGCGTGTCCACGGGAGGGAGGAGCAAAATGGCTGCCACCATGAACGAGAAAGATCTAGTCAGGGTTCATAATGGATTTTTCGATTTAATCTCATATCAAAACATGATCAAAAATATCTCCCTCgcgtttttcttcttccttctgACGGCGAGCCGGAGCCGGGGGGACGAGGGCCATGAGATGGAGGAGTTCCTGAAGAGGGAGCATTCCTTGATCAAACCGTACCAAGGTGTCGGCTCCGCCAGCTCCTCCCACTGGGACCTGATGGGGAATGCCATGGTAACCACAGAACAAGTGCGCCTCACCCAGGACATGCAGAGCAAGCAGGGGGCCGTGTGGAGCCGCATCCCGTGTCACCTGAAGGACTGGGAGCTGCAGGTGCACTTCAAGATCCATGGCCAGGGCAAGAAGAACCTGAATGGGGACGGGCTGGCGCCTGCCCTCTTCAGCAGCTTTACAGCAGGAGggCCAGTGTTTGGCAATATGGACTTCTTCACGGGCCTGGGGTTGTTTGTGGACACATACCCCAACGAGGAGAAGCAGCAGGAGaaGTCTGGGAAAGCTATTCAGTCTGTGGAGCGTATCTTCCCCTACGTGTCGGCGATGGTGGGGAACGGCACGGTGAGCTACGACCACGAGCGCGACGGCCGGCCCACGGAGCTGGGGGGCTGCACCGCGCTGGTCAGAAACCTCAACCATGACACCTTCCTGGTGGTGCGATACGTGCGCCGTAGACTGACCgTGATGATTGACATTGATGGGAAGCACGAGTGGCGGGACTGTCTGGACCTCCCGGGGGTGTGGCTGCCGCAGGGGTATTACTTTGGGGCATCGGCCATCACTGGAGACCTGTCAGatAACCACGACCTGATTTCTCTGAAGCTGTACCAGCTGACTGTGATGCGCACCGCTGAGGAAGAGAAGCAGGAAGAGGAGGTGACTGTGCCCAGGGTGGACAACATGGCCCTGTTCATcgAGGACGAGCGTGACGAGCCGATGAGTGGAGTGACGGTGTTCTTCATCGTCCTGTTCTCGCTGCTGGGCTCCATCATGCTGGCTGTCATCGCTGTCATCGTCTACCAGAAGTGGAAAGAGAACAGCCGCAAGCGCTTCTactgaacacagagagagacagagacagagacccctcccctcccctccacacacacaccacagagaGAGTCATCACTGCAGTGAGCGAGAGATCGCATTCTTCACCACTGGACTGACACAGACCGTCAACTCCATAACCACTGATTTCAGCCAGACTGTCACCTCCATAACCGCTGAACTCTCACTGCAGAATAAACCTGTGTAAGCCCCGGtccgagagagagcgagagacattAACCACTACACCAACAGGCTGGATCTCCCACACATACCATCTCCGCAGTGACGGAGCAGGGAGCGAGAGACACGGGAGGAACTGACAGGAGGAACGATCTGATCTCCAGATGAGCCCTCCCTCACCTccacactggagagagagagagagagagagagagagagagagagagagagcaggggaggAGTGTTCACCTACAGAAGGGATTTTTTCTCACCCTCTCTTTCCTGCCCCCTTTCCCACAAGTGCATTTGAAGTCTTGCTTGCAAAAATAACTACGAAATGGAGTGCGAGAGCACGTTTCTCCTCCTGTCTTCACCCGCTGGCGTTTCCGTTAACATACActggatgggggagggggggctgaAGTCATATGGGTGGAGACCGGAGTGGAAACGCGTGCCCGGCCTGGCCTGGGCGGGGTCCTCTCGTCTTGGCTGGCATGACGGTCCGAGGCTGGGCTCTCAGGAAGTGACTCTCGCAGAGCCGTATTGACCGCCCCCGGGGTACTGTCCTTCAGACGTCAGCCACAAGGACGGGTGTCTAATCATTGTGTTTGTCTCCGTCTCTGGCCCCGTGCCCTAGCTCACAGGTGCAGCTTGGCACGCACTTGGGCACGGGAAGGGACTCAATCCGATACAGATCATGGATGAGTCATACTGTTATAGAAATAAcctttttaatttctatttgtcTGCCTCGAAACCTCCGCCAATCCAAACCCTCGTGTTTGTCATTATTCATGTTGATGTGTAATGGGTTGAATTGGGTGAAATTTAAGGGCTTTTGTGTCTGGTGatattttctattataattTCAGTGATAGTGTTTTTCTTCTACAGCTACACATACAACCAGATCCCCACTGGAGAAACCTGCTTATTACACAGGTccctcctttttgttttgtcctcAGTATTTAGTTGAGCGATGATCCTCCAAGCTCTGTCAGTTAGAAGGGTTTGATATTCATGTGTACCTTCGTCCTCCACTGCTGTACTGTGAATGCGGTGTTGTTTTATCGCCATCGATTTATCCACACTGAGAATCCGAGCCGGCGCCCCAGGGTGCCTCTTGCCGCGTCTCACTGCTGTTGCAAGGCTGCCTGTGAAATGATGTattgaaatgtcttggttatAAATGTTTGCTTCTTTTTTAATCATGTCTGATAGATAGCAGTCTTTCtctgccattttaaaatccaaCTAGGACTGTCTTACTGTGTGTGGGCctgcctgtgtttgtgtctttgtatacttgttgttttttgtaaatttcCAGCTGCTTTGTTCTGCAGTATAAGGAATTCAAGCCCATCAGTCTTCTGCTATAAAGGTCTTGTGCCATACAGCCCTGGCTGCCTTATGGGTCTGAAGAAGCTATAGATCGCTCAGGACTGAGCCTGGGTGTCTGCCTCCTGTGATATTGTTTTTAGGATTTAAAATATCTATAACTATCAAAATAAGTGGCACacactgttttcttgttttttcatccCTTGGATTAATGTTGAAGTGCTTATACTATTACATGTGGAATGCTGTCAGGAATGCACcttgaatgtttgttttgtttgtcagatGCAAAGTAAGGAAATCATGTGATTTAATTCAGCCTGtatttctaaagaaaaaaaaaaaagcaacccTCCAACAcctgccccagtccctgccatgACCTCCTGTCCGTCTCACTGCACGTCAGCCACACGGGTCCAGGTTTTAATGGGCGTTAAAATCAAATGGCCAGAGCCTTTCAAAAGCCACAGTCCAGTGGAAGAGGGTGgctcaaatatgttttttattttatatttttaacaagatGACTGGAAGGAACTTTTGGGCTTTGCTGAGACGGACAGACAAGCCGCCAGATTAATTGACAGGTGATATCTCCGCTTTCCTGTTGCCAGTTTGTTTGCAGCAGAACAGCTAAGTTTAGGGCTTGGAGTTGGTTCCCAGGGTTTGAGCCAGTCTGATTCACTTTGCCTTGGCGGTTACCTACACCACGTTCAGCAGGGAAGGGGGCTCTTTATCCATACCCCCTACCGTGCCCATACGCTGTGAAATTCTGTAATCATTGCACTGACGTGTTTTCTCTTTCCACCCTGGTCTGAAAGTCTGTTCCAGCGTGTCATCAGTACAGTGAGTGTGCACACACAGATGACTGGCTCCTTGCTCTAGTCCCCTCCCCCACAGAATAAAAGTTGGga

Function

GO: NA

KEGG:

id description
K10083 LMAN2L, VIPL; lectin, mannose-binding 2-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82781 lncRNA downstream 11960 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 108790 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 225896 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 265806 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 265806 35081965 ~ 35095653 (-) False G66126
TU82807 lncRNA upstream 56928 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 61022 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 64034 35436290 ~ 35502312 (-) True G66259
TU82874 lncRNA upstream 278724 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 322712 35694968 ~ 35696969 (-) True AMCG00020876
AMCG00020867 mRNA downstream 12233 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020866 mRNA downstream 51388 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020862 mRNA downstream 105259 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020861 mRNA downstream 122860 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020860 mRNA downstream 163813 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020871 mRNA upstream 67773 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020870 mRNA upstream 74598 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020873 mRNA upstream 214565 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020877 mRNA upstream 246368 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020881 mRNA upstream 264794 35637050 ~ 35658112 (-) True AMCG00020881
TU82718 other downstream 191280 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 191280 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 496154 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 547290 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1121762 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 307176 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 441713 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 603508 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1668191 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1692907 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile