RNA id: TU82781


Basic Information

Item Value
RNA id TU82781
length 764
lncRNA type sense_over
GC content 0.55
exon number 6
gene id AMCG00020867
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35344706 ~ 35349499 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcatgtctctctctctccttccttcctgATCAATCCCCCCTAAACCTGCCACTGTGAACGGgtctgacctctctctctccctgagcCAGGACTGCCCCTTTGTAAAGGCTTAACCATGGCAAAAGAACAGAAAGCTGTAGGGTTTGCTGTCGATCCTGCGGAAGCTGAAGAGCTCTCCGGATCAGGAGGTGCGGATCCTGCTGCTGGGGCTGGACAACGCGGGCAAGACCACCCTGCTCAAACAGCTGGCCTCCGAGGACGTCAGCCACATCACCCCCACGCAGGGCTTCAACATAAAGAGTGTGCAGTCTCAGGGCTTCAAGCTGAACGTGTGGGACATCGGGGGCCAGAGGAAGATCCGTCCGTACTGGAGGAACTACTTTGAGAACACAGACGTGCTGATCTACGTCATCGACAGTGCGGACAGGAAGCGCTTCGAGGAGACCGGACAGgagCTGGCCGAGCTGTTGGAGGAGGAGAAGCTCAGCGGGGTGCCTGTGCTGGTTTTTGCCAACAAGCAGGACCTGATGACGGCGGCACCGGCGGCGGAGATCGCAGAGGGGCTGAACCTGCACATCATCAGGGACAGGATCTGGCAGATACAGGCCTGCTCTGCTGTGACCTCCGAGGGGGTGCAGGATGGCATGACATGGGTCTGCAAGAACATCGCAAGCAAGAAGAAATAACAAGAGGGGCACAAGCAGATGAAAATCAGTCTCCAACCCTCTACTGTATATTCcttaacttatatatatataaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82744 lncRNA downstream 92037 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 209143 35134978 ~ 35135563 (-) True G66154
TU82674 lncRNA downstream 249053 35081965 ~ 35095653 (-) False G66126
TU82677 lncRNA downstream 249053 35081965 ~ 35095653 (-) False G66126
TU82675 lncRNA downstream 262839 35079678 ~ 35081867 (-) True G66126
TU82807 lncRNA upstream 79685 35429184 ~ 35429394 (-) True G66228
TU82811 lncRNA upstream 83779 35433278 ~ 35433565 (-) True G66232
TU82845 lncRNA upstream 86791 35436290 ~ 35502312 (-) True G66259
TU82874 lncRNA upstream 301481 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 345469 35694968 ~ 35696969 (-) True AMCG00020876
AMCG00020866 mRNA downstream 34635 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020862 mRNA downstream 88506 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020861 mRNA downstream 106107 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020860 mRNA downstream 147060 35189520 ~ 35197646 (-) True AMCG00020860
AMCG00020853 mRNA downstream 176837 35163535 ~ 35167869 (-) False AMCG00020853
AMCG00020865 mRNA upstream 11960 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020871 mRNA upstream 90530 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020870 mRNA upstream 97355 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020873 mRNA upstream 237322 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020877 mRNA upstream 269125 35618624 ~ 35631985 (-) True AMCG00020877
TU82718 other downstream 174527 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 174527 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 479401 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 530537 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1105009 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 329933 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 464470 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 626265 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1690948 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1715664 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile