RNA id: AMCG00020871


Basic Information

Item Value
RNA id AMCG00020871
length 1167
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00020871
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35440029 ~ 35445018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagtgacagagagagagagagaNNNNNNNNNNgagagagagagagagggaaaggaatGATACCTCCACAGCACTGAGCCCAGGGTCTGCAGAAGGTGGATTTGGTGGCATGGGCCAGCTAGTGTTACAGCACAgctgagaaagagagggagcgagaggtAGAGGGTGGGTCCATGCGAGAaggactgagacactgagagagagagccggAGCCAGGGAGTGGGTGAGAGGCAGTtagactgagagagggagagagaggaaaagaaccggagcgagagagagggagagaggtagaGCGACAGTCCCTGTGCTCGGTCTCGGCCGCTCGGGGAGCATGTGGGCGCTGCTGACGGAGCTGCTGTTCAGCCTGGTGCTGCTGGCCTTCTTCGTCATCAGCTGCCAGAACGTGCTGCATATCGTGTCGGGCTCGCTGCGCTCCGTGCTCAAGTACGTGCACCAGCAGCTGGACCAGGAGCTGGGCGAGGGCCTGGGCACGCCGGACGACGAGGAGTCCGTCACCACCCGCGTGGTGCGCCGCAGGGTCATCGTCAAGGGTGATGAGGTGGAGGACATTCCAGGGGAGCAGGTGGGCGAGGGTGAGCAGGAGGTGAGCGTGGAGGGGGCACTGCAGGAGCCTGAGGAGCTGGAGGCCGAGGCTGAGCAGTTCATGAACTACGCCATCCTGGGCCGGGACAGCAGTAACAAGTCAGAGATTATGGATGTGAAGAAAGGGGCTCAGATTGTGAAGCGCGCCAGTCTGCGGAGGgaTCTCACATCCACTCCCAAATCATCCTACAGAGAGTCATGACAAAGGGAcgtggagaagaagaaaaatgcaaaaaaatacaacaaaaaacaacatgaaacaaaaaacaaaacaacgccAAACGAAAACATGGGGGGGGGACAAAAACACACCCGATGAAGGAcgagaagaagagaaaaaaatacaaaaaaaagaatgagtgaaagagaacacaaaaacaaaaatgggaaTTTAACTTGTAGTTTTGttacctttttttaaagaaaaaaaaaactaaaaacatactAGGCTAGAGGCATGATTtcttaacaaacaaaatgctaaagAGAGCTTCCTGTACTCTGTATCAGCATGACTGACTGCCAAAGCATGATCTGCAACTACCCTAATGACTGAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82811 lncRNA downstream 6464 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 10635 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 90530 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 187360 35252402 ~ 35252669 (-) True G66181
TU82716 lncRNA downstream 304466 35134978 ~ 35135563 (-) True G66154
TU82874 lncRNA upstream 205962 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 249950 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 249950 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 257745 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 326466 35771484 ~ 35771686 (-) True G66327
AMCG00020865 mRNA downstream 67773 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020867 mRNA downstream 90803 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020866 mRNA downstream 129958 35300385 ~ 35310071 (-) True AMCG00020866
AMCG00020862 mRNA downstream 183829 35253794 ~ 35256200 (-) True AMCG00020862
AMCG00020861 mRNA downstream 201430 35235751 ~ 35238599 (-) True AMCG00020861
AMCG00020870 mRNA upstream 1836 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020873 mRNA upstream 141803 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020877 mRNA upstream 173606 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020881 mRNA upstream 192032 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020882 mRNA upstream 226512 35671530 ~ 35675900 (-) True AMCG00020882
TU82718 other downstream 269850 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 269850 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 574724 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 625860 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1200332 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 234414 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 368951 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 530746 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1595429 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1620145 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile