RNA id: AMCG00020876


Basic Information

Item Value
RNA id AMCG00020876
length 1049
RNA type mRNA
GC content 0.36
exon number 3
gene id AMCG00020876
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35694968 ~ 35696969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGTGGCTGCGATGCTGGTTCATGTATAAAAGGATGTGATGTACATGCTTCTGTAGAGAGGCTTCAACACTGCAGAGATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGCATTACCCTGGCTCATGTGGACCTTGTGAGCTCAGatttgtatCTGGGAAGCTCTTTTGTCAAGAGGGCGGTGGATGATGCGATTCTGTTAGTGGACCAAGCATACAAGTACTCCCGTGCTGTGTAAGTGACGAGCACACCTCCGGATCCACTGGTCTGTGATTTATTCTGATGTTTTAATTGGCACTTGACATCAGTTGCTTTGCAGAGATTATAATAtcccaaaacaacacaaatgttagacagtttgttaaaataaaaataaaaagcaccaaGAGACCACAGTATGAAGACCAACATgaacacttatttaattattaaaacacgATTTTTGCCTTGTGAATGTAGGGGACTTAAAACAGGTGTGTCTCTGCATGTGTCTGTTTCTATatttctttgtgtctgtttctatatatctgtgtgtctgtatcagATCTGGGCCAAAATAGctgtttttgatattttatttgtcaatGCCAACTCTTTCAAATtgttgaaatattgaaatatatattgtcaactgaagcaatttttttttaattttgaaaatatttatttgacaaaaacaaatattatttgaaagttatttaaaaataataaatggtcATTCTCCCTAAACATGTAGCACTAATGTTACATGAGTGTCAACAGTTGGACATGTCATTATCTCCtatattcttgtgttttgtaagaATGAAATGCCTTATCTAAATACATCTGTGTGAAAGAAGATAATCAGCCAGCTACATGCTATGCTAGTGGCATGTTGTGATTGGAACAAAGacaccaaacaggtgtacaaaacgtatataaatatatattatcttgtgttcttggttgtctgatatatgttcattttaacatatcaatgtctgcatgcatctgtgtgtgttcatgagAGTGAACATTTTGCTAcctgtttgtgttatttataatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82874 lncRNA downstream 2676 35650980 ~ 35692460 (-) False G66279
TU82845 lncRNA downstream 192824 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 261571 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 265742 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 345637 35344706 ~ 35349499 (-) True AMCG00020867
TU82885 lncRNA upstream 5795 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 74516 35771484 ~ 35771686 (-) True G66327
TU83045 lncRNA upstream 229570 35926538 ~ 35937258 (-) True G66416
TU83061 lncRNA upstream 278796 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 538804 36235772 ~ 36236927 (-) True G66499
AMCG00020879 mRNA downstream 4796 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020882 mRNA downstream 19236 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020881 mRNA downstream 37024 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020877 mRNA downstream 63151 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020873 mRNA downstream 103793 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020878 mRNA upstream 43077 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020880 mRNA upstream 62883 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020886 mRNA upstream 82075 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020889 mRNA upstream 104317 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020887 mRNA upstream 116905 35813873 ~ 35819134 (-) False AMCG00020887
TU82875 other downstream 10581 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 524957 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 524957 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 829831 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 880967 34808774 ~ 34814169 (-) False AMCG00020836
TU82986 other upstream 117001 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 278796 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1343479 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1368195 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1934832 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile