RNA id: TU82880


Basic Information

Item Value
RNA id TU82880
length 1313
lncRNA type sense_over
GC content 0.37
exon number 4
gene id AMCG00020876
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35694968 ~ 35696969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGTGGCTGCGATGCTGGTTCATGTATAAAAGGATGTGATGTACATGCTTCTGTAGAGAGGCTTCAACACTGCAGTTCAGGTTCAGAGTCTGATGCTGGGCGTAGAGTGTGCAATCAATTTCTAACGAAGGGGCAACTTCTCGCAGCGGTCGGAGCTCACTGTTATCGAGAGATGGCTGCCGTTTTGCTCTTGCTTGCCCTGGGCATTACCCTGGCTCATGTGGACCTTGTGAGCTCAGatttgtatCTGGGAAGCTCTTTTGTCAAGAGGGCGGTGGATGATGCGATTCTGTTAGTGGACCAAGCATACAAGTACTCCCGTGCTGTGTAAGTGACGAGCACACCTCCGGATCCACTGGTCTGTGATTTATTCTGATGTTTTAATTGGCACTTGACATCAGTTGCTTTGCAGAGATTATAATAtcccaaaacaacacaaatgttagacagtttgttaaaataaaaataaaaagcaccaaGAGACCACAGTATGAAGACCAACATgaacacttatttaattattaaaacacgATTTTTGCCTTGTGAATGTAGGGGACTTAAAACAGGTGTGTCTCTGCATGTGTCTGTTTCTATatttctttgtgtctgtttctatatatctgtgtgtctgtatcagATCTGGGCCAAAATAGctgtttttgatattttatttgtcaatGCCAACTCTTTCAAATtgttgaaatattgaaatatatattgtcaactgaagcaatttttttttaattttgaaaatatttatttgacaaaaacaaatattatttgaaagttatttaaaaataataaatggtcATTCTCCCTAAACATGTAGCACTAATGTTACATGAGTGTCAACAGTTGGACATGTCATTATCTCCtatattcttgtgttttgtaagaATGAAATGCCTTATCTAAATACATCTGTGTGAAAGAAGATAATCAGCCAGCTACATGCTATGCTAGTGGCATGTTGTGATTGGAACAAAGacaccaaacaggtgtacaaaacgtatataaatatatattatcttgtgttcttggttgtctgatatatgttcattttaacatatcaatgtctgcatgcatctgtgtgtgttcatgagAGTGAACATTTTGCTAcctgtttgtgttatttataatttctttctgatgttttcCTGCTGTAGACTTGCACAAATATGTCACGGTgaaacagtgaacagtgaatTTGTGAATTAAATACGGTGCTTGAGATCTGtggttgtgtttgtgtagcGTAGTCTTTCCACCAGTTGTGCAGCTCTGAATTGATGGTACATATTTAAACAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82874 lncRNA downstream 2508 35650980 ~ 35692460 (-) False G66279
TU82845 lncRNA downstream 192656 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 261403 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 265574 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 345469 35344706 ~ 35349499 (-) True AMCG00020867
TU82885 lncRNA upstream 5794 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 74515 35771484 ~ 35771686 (-) True G66327
TU83045 lncRNA upstream 229569 35926538 ~ 35937258 (-) True G66416
TU83061 lncRNA upstream 278795 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 538803 36235772 ~ 36236927 (-) True G66499
AMCG00020879 mRNA downstream 4628 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020882 mRNA downstream 19068 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020881 mRNA downstream 36856 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020877 mRNA downstream 62983 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020873 mRNA downstream 103625 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020878 mRNA upstream 43076 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020880 mRNA upstream 62882 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020886 mRNA upstream 82074 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020889 mRNA upstream 104316 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020887 mRNA upstream 116904 35813873 ~ 35819134 (-) False AMCG00020887
TU82875 other downstream 10413 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 524789 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 524789 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 829663 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 880799 34808774 ~ 34814169 (-) False AMCG00020836
TU82986 other upstream 117000 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 278795 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1343478 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1368194 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1934831 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile