RNA id: AMCG00020877


Basic Information

Item Value
RNA id AMCG00020877
length 552
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00020877
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35618624 ~ 35631985 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttgggaTTCAAGATCACTTAAGCAGAGGAGTATCCGGTATTAAAGACAAACAGCTCGGGGTTGAGATGGATTCGGTCCGGTCTTGGGTTCGTAACGTCGGGGTTGTGGATGCAAACGTAGCGGCGCAAAGTGGGGTGGCCCTGTCCCGGGCCCACTTCGAGAAGCAGCCGCCCTCCAACTTGCGCAAGTCCAACTTCTTCCACTTCGTGCTGGCGCTGTACGACCGACAGGGACAGCCTGTGGAGGTGGAGAGGACGGCGTTCGTGGACTTTGTGGAGCATGACAAGGAACAAAGTGGGGAGAAGACGAACAACGGAACTCACTACAAACTGCAGCTCCTGTACAGCAATGGGGTGCGAACGGAGCAGGACCTGTACGCGCGGCTCATCGACTCAGTCACCAAACAGCCCATCGCATACGAAGGACAGAACAAGAACCCAGAAATGTGCCGGGTGCTGCTCACTCACGAGGTCATGTGCAGccgGTGTTGTGAGAAGAAAAGCTGTGGAAACCGCAACGAGACGCCCTCGGACCCCGTCATCATCGAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09103 EBF, COE; early B-cell factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82845 lncRNA downstream 116312 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 185059 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 189230 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 269125 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 365955 35252402 ~ 35252669 (-) True G66181
TU82874 lncRNA upstream 18995 35650980 ~ 35692460 (-) False G66279
TU82877 lncRNA upstream 62983 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 62983 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 70778 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 139499 35771484 ~ 35771686 (-) True G66327
AMCG00020873 mRNA downstream 27281 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020870 mRNA downstream 133199 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020871 mRNA downstream 173606 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020865 mRNA downstream 246368 35361459 ~ 35372256 (-) True AMCG00020865
AMCG00020867 mRNA downstream 269398 35347274 ~ 35349226 (-) False AMCG00020867
AMCG00020881 mRNA upstream 5065 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020882 mRNA upstream 39545 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020879 mRNA upstream 47448 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020876 mRNA upstream 63151 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020878 mRNA upstream 108060 35740045 ~ 35746487 (-) True AMCG00020878
TU82718 other downstream 448445 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 448445 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 753319 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 804455 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1378927 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 47447 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 181984 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 343779 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1408462 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1433178 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile