RNA id: AMCG00020879


Basic Information

Item Value
RNA id AMCG00020879
length 2792
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00020879
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35679433 ~ 35690340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAAAACACACGCCTTGGCGCTTCAAACACCCCATTCGCCCGCTGGCTGCCCTCGGAATATGATGACGGGATTTTCACTCCCAAAGGATGGGACCCTTCCAAACGCTATAATGGGTTTCCCCTTCCCCTGGTCCGAGAAGTCTCCAATAAGATTCTGAGGACTCGAAACCAGGATGTGGAGAGCGACACCATCTACACCCACTTCCTGACCATCTTCGGCCAATGGACCGACCACGACCTGACCATCACTCCGTTCTCTCCCAGCATTCGCTCCTTCAGCAACGGGATCGACTGTGACAAGAGCTGCCAGCAAGCCAGCCCATGCTTCCCCATTAGGATCCCGCTCGGCGACAACAGGATCCGCAACACGTCCAACTGCATCCCGTTCTTCCGCTCGGCCCCGGCCTGCGGCACGGGTGACAACGGGTACATGTTCGGTGGGCCCAACGTCCGGGAACAGATCAACGCCCTCACTGCCTTCATCGATGTGGGCCAGGTGTACGGCCCCGAAGAGAATCTGGCCCTGTCCCTGCGCAACCTGACCAACGACCTGGGGCTGTTGGCCATCAATCAGAACTTCTCAGACAACGGACGGGAGTTCCTCCCCTTCAGCCAAAAGACTGTCAATATGTGCGCCACCCGCAGGAAAGCCACCAATAACAACGCGCTGACCGAGGTGCCCTGCTTCGTAGCAGGTGACGAGCGGGTGGACGAGAACATCGGTTTGGCGTCTACCCACACGCTGTTCATGCGGGAGCATAACCGACTGGCGCGTGGCCTCCGATCCCTCAACCCCCACTGGAGCGGGGAGAAGATCTACCAGGAGGCCCGGAAGATCATGGGGGGATATCACCAGGTCATGACCTTCCGGGACTACCTGCCCCGGATCGTGGGCCCAGATGCCATGACCAGGCTGCTACCCTCTTACAGAGGCTATAATGAGAACATGGACCCCAGCATCGCCAACGTCTTCTCCACCGCCGCCTTCCGCTTCGCCCACCTCGCCATACAGCCCTTCATGTTCCGGCTGGACAACAACTACAAAGAGCACCCCCGCTTCCCCAGCGTCTTGCTGCACAACGCCTTCTTCACGCCCTGGAGGCTGCTGTTTGAAGGTGGCATCGACCCTCTCATCCGGGGGCTCATCGGCCGCCCAGCCAAACTCAACACCCAGCAGCACATGATGCACGACGAGCTGAGAGAGCGTCTCTTCGAGCTCACCAGCCGTCTGGCCCTGGACCTGGGGTCTCTGAACATGCAACGCGGGAGGGACCATGGCCTGCCTGGTGAGAACAACTCCCCTCCCCTTCATCATTCCCCATTCAGCCCAGGTTTTGCTATGCATTTTTTGTACGGGACCCCTGACAACATCGACGTCTGGCTTGGGGGAGTGGCTGAACCTTTTGTGAGGGGGGGGCGAGTCGGGGAGCTCTTCGCCTGCATCATCGCCACGCAGTTCCAGAAAATCCGGAGCGGAGACAGGTTCTGGTGGGAGAGGAAGGAAGTGTTCACCAGCAATCAGCAGGCCGCCCTCCGCCGAGTTCGGTTAGCCAGGATCATCTGTGACAACACGGGGATCACAGACGTCCCCAGCGACCCCTTCCTGTACAGCCCCCGCGGCCAGAGTTACACCAGATGCTCCAGCATCCCCACCTTCGACCTGAACCCCTGGAAGGAAGCAAATTCTTCCGGATCCAGCCCACCCCCTGGACACAAAACCTACACTGGACAGCATGGACCCCAGGGTGCAGAGGGACCCAGAGGAAATCCTGGACCACTGGGGGCCCCAGGTCTGCAAGAAGCCAAGGGCCcgcggggagagagagggccTCCCGGTCTCGCCACCAACCTCCCGAAGTCTGCCTTCTCCACCCGGCTGGGCTACAGCAACCCCCCCCCAGACCGCCCCATCGTGTTCCGGGAGACCATCTACAACGGGCAGAACCATTACGACAACCAGACAGGGGTGTTCACCTGTGTCTTGCCCGGTGTGTACGAGTTCAACTTCTCCTGCAGGCTGTACAGGAATCTGGGCAACATTGAGCTGAAGAAGAATGGTGTGAACGTTGGGCACTCCATCAGCTCCTACAGTGGGGGCTACATCAGCGCCACAGGCAGTAGCATGGTGCCATTGGAGCAGGGAGACCAAGTCTGGCTGCAGTCCAGCTCCGGTGGCAACACCCTGACCGCAGAGAGCTTCTTCTCGGGGCACCTGATCTTCTCTGTGTAAATTGTGCACACGGCCTGTCactttctgtcttttcttttaattcatttaagaTCAGAATTACTTTTATATAATGCGTTTATGTTTTGATTCTAAATTTGTATCCCATAAATCTTATGCCTCAACTGTAGCAAGCTttcaatagaaaatacattaaaaaaaaaaaatcccaaaagtctggtaaagtttttaaaaatgaaaagtcaaTGAATGTTATCTTTGTCTTCTGACTGCAATTCACTGGAAGTGTAAAACAGCAGAATTCCTACTTTTACCAAAACCATATTGGGATTCCTGGAAACATAAATAAGTGTAATAAAGTATAAGGTGAATAAACaagttattaatatatatataatagctcAGAGAGGTAATGTCATTTTCAGGCTTCCTGATCATCCCATGAAGTAATTTATGCAAATAAGCTTTGttaattatgataatttaatctcaattattattgaatattttttttaatataaaaagtctctgcatttaaattgtaatgcatGCAATGTAAGGCAAATAACtatcaaataaaagtaattaaaatacaagataaA

Function

GO: NA

KEGG:

id description
K10788 EPX, EPO; eosinophil peroxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82845 lncRNA downstream 177121 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 245868 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 250039 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 329934 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 426764 35252402 ~ 35252669 (-) True G66181
TU82877 lncRNA upstream 4628 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 4628 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 12423 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 81144 35771484 ~ 35771686 (-) True G66327
TU83045 lncRNA upstream 236198 35926538 ~ 35937258 (-) True G66416
AMCG00020882 mRNA downstream 3533 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020881 mRNA downstream 21321 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020877 mRNA downstream 47448 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020873 mRNA downstream 88090 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020870 mRNA downstream 194008 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020876 mRNA upstream 4796 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020878 mRNA upstream 49705 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020880 mRNA upstream 69511 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020886 mRNA upstream 88703 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020889 mRNA upstream 110945 35801285 ~ 35810870 (-) True AMCG00020889
TU82718 other downstream 509254 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 509254 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 814128 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 865264 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1439736 34222315 ~ 34239697 (-) False AMCG00020810
TU82986 other upstream 123629 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 285424 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1350107 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1374823 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1941460 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile