RNA id: AMCG00020882


Basic Information

Item Value
RNA id AMCG00020882
length 492
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00020882
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35671530 ~ 35675900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCTGGACCACCAACTTTCCAGAGTCACTTGCTGCTGCCACTGCAGATCGCTCTCTCTGGTTCACGCTGTGCTTCTCCTGCCTGCCCCCAGTCACAGGGTACAATGCCTGGCGTGGATTCTGCGGCCTGTCTCAGCCCAAGAACGTACAGCAGCTGGGCTCTGTGCTCCGGAACCCCGATCTGGCACGGCGACTGATACAGTTGTACGGGACCCCTGACAACATCGACGTCTGGCTGGGGGGAGTGGCTGAGCCTTTTGTGAGGGGAAGGTTCTGGTGGGAGAGGAGGGAAGTGTTTACCAGCAATCAGCAGGCCGCCCTCCGCAGAGTCCAGTTAGCCAGGATCATCTGCGATAACACGGGGATCACAGACGTCCCCAGCGACCCCTTCCTGTACAGCCCCCGCGGCCAGAGTTACAACAGATGCTCCAGCATCCCCACCTTCGACCTGAACCCCTGGAAGGAAGCAAGTGAGTCCAGGCTGTGA

Function

GO: NA

KEGG:

id description
ko04611 Platelet activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82845 lncRNA downstream 169218 35436290 ~ 35502312 (-) True G66259
TU82811 lncRNA downstream 237965 35433278 ~ 35433565 (-) True G66232
TU82807 lncRNA downstream 242136 35429184 ~ 35429394 (-) True G66228
TU82781 lncRNA downstream 322031 35344706 ~ 35349499 (-) True AMCG00020867
TU82744 lncRNA downstream 418861 35252402 ~ 35252669 (-) True G66181
TU82877 lncRNA upstream 19068 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA upstream 19068 35694968 ~ 35696969 (-) False AMCG00020876
TU82885 lncRNA upstream 26863 35702763 ~ 35703073 (-) True G66284
TU82933 lncRNA upstream 95584 35771484 ~ 35771686 (-) True G66327
TU83045 lncRNA upstream 250638 35926538 ~ 35937258 (-) True G66416
AMCG00020881 mRNA downstream 13418 35637050 ~ 35658112 (-) True AMCG00020881
AMCG00020877 mRNA downstream 39545 35618624 ~ 35631985 (-) True AMCG00020877
AMCG00020873 mRNA downstream 80187 35586821 ~ 35591343 (-) True AMCG00020873
AMCG00020870 mRNA downstream 186105 35446854 ~ 35485425 (-) True AMCG00020870
AMCG00020871 mRNA downstream 226512 35440029 ~ 35445018 (-) True AMCG00020871
AMCG00020879 mRNA upstream 3533 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020876 mRNA upstream 19236 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020878 mRNA upstream 64145 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020880 mRNA upstream 83951 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020886 mRNA upstream 103143 35779043 ~ 35790548 (-) True AMCG00020886
TU82718 other downstream 501351 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 501351 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 806225 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 857361 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 1431833 34222315 ~ 34239697 (-) False AMCG00020810
TU82875 other upstream 3532 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 138069 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 299864 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1364547 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1389263 37065163 ~ 37067792 (-) False AMCG00020922

Expression Profile