RNA id: AMCG00020886


Basic Information

Item Value
RNA id AMCG00020886
length 2233
RNA type mRNA
GC content 0.61
exon number 15
gene id AMCG00020886
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35779043 ~ 35790548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCGGCCAACCGTGTGGCTGGGGCAAGTTTTCGGGAGAGTGTTTACGTGTCCGGGCAGACACGGGGGGGCAGGGACAGTGACACGGGGAGAGGATTTCACATGAGCTGGCTGTCCTTCCAAGCAGAGGACACTGACCGAGCACCCGGAGCATGGAGACGGCAGGTCGAGACACCTCTGCAGggGCCCCATATGTCCAGACCTCCCCTAAGAAGAGAAAGGGGGGCGGCCACAGAGGGACCCCAGGCAAAACGACGGCCCCGCCTGAAAGTGCCCCCGGCGAGAGCCGGATGAAGCGCCTGTTTGGGTTCAAGAAGGAGGACTTGTCTTCCTGGCACAGGCTGGTCTGCCTGCTCAACAGACCCACAGACTCGGCCTCTCTGGGCATGTTCCGGTTCCTGTTCGGCCTGCTGATGGTGGTGGATATCCCCCAGGAGAGAGGCCTCAGTTACCTGGATTACAAATACCTGGACGGGGCTGAGGTGTGCCGCTTCCCTCTCTTCAACTTCCTGAAGCCCTTGCCCATGGACTGGATGTACCTGGTCTATGTCATAATTACCTACTGGTACGTCTTCTTCCTGGACAAGACAGCCTGGAATAACCACTCCTACCTGTACGGCCTCATCGGCGTCCAGCTCACCCTCATGGACGCCAATCGATACTGGTCTATCGACGGGCTGAGGAACCCCAAGAAGAGGAACGCCCATGTGCCCCTGTGGAACTACActctgctcaggggccagATTTTTATCGTGTACTTCATTGCCGGGATCAAGAAGCTGGATTCTGATTGGATAGGAGGATATTCCATGGGTTACCTGGCAAACCATTGGCTGTTCAACCCCTTCAAGATGGTGATGTCAGAAGAGATGACCAGTCTGCTGGTGGTCCATGGGGGCGGCCTGATCCTGGACCTGACGGCCGGATACCTGCTCTTCTTTGATGCCACACGGCCCACTGCCATCGTCTTCGTCAGCTACTTCCACTGCATGAACTCCCAGCTGTTCAGCATCGGGATGTTTTCCTACACCATGCTGGCCACCTCCCCGCTGTTCTGCTACCCTGACTGGCCCCGCCGCTTCTTCGGCCACTTCCCGGCATTCCTGAGAGCCGTCCTGCCTCCCGTGGAGCCGCCCCCCCAGCCCAGCGCCTCCTGTGTATACCCAAAACCCCCCGCAGCCTCCCCCACCATGCCCACCAAGCCCAGCCGGCGCCACCGGCTGGCCGCTGTCTTCGCCCTGCTGTACCTGGCTGAGCAATTCTTCCTGCCGTACTCGCACTTCATCACGAAGATCACGTACCGCGACGGCAAGACCGGCGAAGTGGGCTACCTCAACCCTGGGGTGTTCACCCAGAGCCGGCGCTGGAAGGACCATGGCGACATGCTGAAGCAATACGCCACCTGCCTGAACGAGCGCCTGGAGCACTACAACATCTCCCAGGCCGAGATCTACTTCGACATCTGGGTATCCATCAATGAGCGCTTCCAGCAGAgGATCTTTGACCCCCGCGTGGACATCGTGAAGGCCGACTGGTCGCCGTTTCGCCCCAACCCCTGGCTCATGCCCCTGCTGGTCGACCTCTCGCCCTGGCGGACCAAGTTCCTGGACATCGAGAACACCCTGGACAACCAGACCGAGGTGGTCTTCATTGCCGACTTCCCAGGGCTACACCTGGAGAACTTTGTGAGTGAGGACCTGGGGAACACCAGTGTGCAGctGCCGGCGGGGCAGTACCACAGGGTGCACACGGTGTCTTCGGAGCCCTCCTGCTACATGTACATCTACGTGAACACGACCGAGGCGGTGCTGCTGCAGAACCTCACCCGGCTGTACGAGCTGCAGGAGAGAGTGCGCAACGGCACTGAGACGGAGCCCCTGCCCCCCGAGCTGCTGCCCATCCTGAATGGGACGGGGGAGGAGGTGAACGTGACGGACCCGGTGCTGCGGACCTTCCTACGGCAACAGCAGCGCAGGGAGGAGATGCAAAGGAGACGCAACGCTACGGTGACCGAGAAGGTCACGCGCTTCGCCCAGAAGAAATACTACCTCCTCCGGCGCAGCTTCCTGATGACATCCATCGCTCTGCGGAACCTGGTGCTGGGCCTCCCCCCTGTGGAGCAGCTGGCGCAAGAGGTGGCCTATGCCAACATGAAGGACCCAGGGAGGACCGAAGCCACAGAGACCCGCCAGGACGAGAACGTGAAGGACGAGGTCGGCCACGGGGAGCTGTGA

Function

GO: NA

KEGG:

id description
K10106 GGCX; vitamin K-dependent gamma-carboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82933 lncRNA downstream 7357 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 75970 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 82074 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA downstream 82074 35694968 ~ 35696969 (-) False AMCG00020876
TU82874 lncRNA downstream 86583 35650980 ~ 35692460 (-) False G66279
TU83045 lncRNA upstream 135990 35926538 ~ 35937258 (-) True G66416
TU83061 lncRNA upstream 185216 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 445224 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 487602 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 956967 36747515 ~ 36747743 (-) True G66527
AMCG00020880 mRNA downstream 13613 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020878 mRNA downstream 32556 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020876 mRNA downstream 82075 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020879 mRNA downstream 88703 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020882 mRNA downstream 103143 35671530 ~ 35675900 (-) True AMCG00020882
AMCG00020889 mRNA upstream 10737 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020887 mRNA upstream 23325 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020885 mRNA upstream 36734 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020888 mRNA upstream 73586 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020900 mRNA upstream 186926 35977474 ~ 35986712 (-) False AMCG00020900
TU82875 other downstream 94488 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 608864 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 608864 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 913738 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 964874 34808774 ~ 34814169 (-) False AMCG00020836
TU82986 other upstream 23421 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 185216 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1249899 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1274615 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1841252 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile