RNA id: TU82986


Basic Information

Item Value
RNA id TU82986
length 3170
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00020887
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35813873 ~ 35819830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAGGAAGCAGGGGGGAAGCAGGgggccttttgttttgtttttgttttagggGAAATTAATCTAAATATTAGTCGTCTTGACGTTAGTTAGGAATCAGAATCCGCGAGAGAACAGCGCAAGTACTTTCAGACCCGGGTCGGGAGTCAGACTGAGCACAGGAGtacagattaaatcataaaagtCAACACAAAACGCGTTTGAACAAGTCTTCATTTTAGGCCAGCCGTCTTTATTGTCGGCTGTGACATTGTTCACACTATCTGCATTTCCCGATGTAGTTTAGAGTAAGACTCGCagtagtgttgttgttgttttttttagtaaagAGGCAGctatttttttactattattatttattatcgtATTATTTTCACCCTTGTGTAATTTAATAACCAATCATTTCCGCATAGACTGGTGTCGTTTACGATGTGTTGTAAATGAACCGATACTCATAACACTGGAAATCGGAATTGTTTTGTCTCCCGGCCGACGCACAGACTTGGTAGTCGTTGGAAATTGATCTTCAAGTTATTGTCcgttctttttctttgtctaaAACTGCacgtactttttttttcttccgtatattcatttttttaaagcatcgTTTAAAGGTAAGAGAAATCGTGGCACCTTCTTGTCAATACGGATATTAATTCGAGATTACGAGGAGTTCCGCAGTAGTCCGGGGACATGTATGCGCCACCGGGATCCGGACTGCCCGGGAGCCGGCGCAGGCGAGGTGCTGGGGGGAGCGCCCTGCCGAAGCAACCCGAAAGAAGCCTAGCCTCGGCTCTGCCCGGAGCCCTCTCCATCACCGCCCTGTGCACGGCGCTGGCTGAGCCGGCCTGGCTGCGGGTACACGGGGGCACCTGCCCGAGACAGGAGCTCGGGGTGGCCGATGTCCTCGGATATGTGGACCCTAAACTTCTGGAAGAATACTGCATGAACCCCCAGACGATCCTCCTGCTGCGAGTCATTGCTGCCTTCTGCTTCCTGGGCATCCTCTGCAGCCTCTGTGCCTTCCTGCTGGATGTCTTCGGGCCCAAACACCCAGCCCTCAAAATCACCCGCCGCTACGCCTTCGCACACATCCTCACAGTTCTTCAGTTTCCCAGCGCGAGTGGCAGCTGAGAAGTGTGTCTTGATTGTTACGCTAAGACCGCACTATGGGGGGAGCTCTCGGCACACTGACAGAGCAGCATCGGACACTGACCGACACAGGACAGTCGAGCCCCGTGGCCACGACATGCTCTAAGACCCGGGCCGGCCAGGACTGAGCTGGGCTTTCAGTCATGTGGCTCTTGCTTGGACTTTTTAAAGTGCGGTCAGTGGCTGCCTCCTATGCCATTCACCAGACTTTTGATCTTTTTCTCTACACAGTGTCCACAAAGCATTAGATCAGCAAAAAGTGTCCAGACAGTGTTATGGcggagatcaaaataaaatgataaaaaaaataataataatgataataaaaaaaacaccagcaacTGATGTATAAAGCGGCGGCTTGCTTTCGGTGAGGCGCCCCAGATCTTCATTGTGTTTTGAGGGTAAACAAGGTTGTATAAGACATGCAGGGGAACTGAGAGCCAACGAGTGGTTATTAAAACGTGAAAATAGATCAAATCGACGCTACTTACAGATGGGGCAAGGGAAACTTGTGGGAGAGGactttaaaaaccaaaaacgATTTTAAGCCCAAATTTTACCCCTTTGGTAACCCTGAACACATTTGCACTaactatttaatttcaatttaaaattactcaattaaaatgcatattcagAAAAACATGCTCTGAGATATTACCCTGCTGTAAGAGTATAGTTAGGTTTTTAGCAAACAGAACTCCAAGCTGTTCTCGAATTCATAAGACCATGCAGCTTTGAATGTCTGAAATCTGATAAAAGTTTGTAAATATAACCATGCAAATGATTTGGTAATTGACAGCCACACAGTGTACATGTGAAGGAGGAATGGTGGGGTTTTAATGTGGCTTGATGCTAAAAGATGTCTGGTCTTACACAGCCTTGTTTTCCAAGCtttgttagttttgttcctaCTTCAGACTCGAGAGCAATGTGTATGCCGATGCCACTTTACAAACACttgtaatgtgtatatatttttgattgcgtttcaaaactaaaatgacATGTTTGATGGGACTGGTTTGTGTTAAAGTGCTGCACCTGAACGACAGTCATCAGACGGTGTGATGGTCCGTGAGGGCGTGTCTATGAAATCTGTTTGAATGTGTTCCACCTCTTCCACACTTGGCAGAATTTCAGCCGTTATGGGACAGATTGGGATTGTGGCTCAAGTGGTTGTAATGAATGGACCTTGTTAATTTGGGAGCTGGTTTCCTGTCACTTTCTCCTCTTTCAATATCCAGGACCcttaatgcaataaatatattttaccaaCGAAAATAAATATCTCCTGCACAATTGCTAGGCCACTGCCTCCTCCCACCACCTTGCCTGGGATTTTAACACCTTTTGTGTGCGTTTACAAGCCTGCATGTTTGCTGTGGAGTCCATACAGACATGTTGGTTGAGGCGGGGGAGGTGGTTGGGGTCTCGGATAACATTCAACTTGATCCCAGTGACAAATGGAAACCCGGCCCAAATCACATGAGGGTTCCTACAGTCTGGTGTGGTTCATATGTGTGCTGTAAACAAAGCCACCAACTTTTTTTCTATACAAAATCACACACTCTGTACACTGCCTCGTCACCTCAACAagattgtgttgtttatttgtatttattattatttttatctacaATATCTCCTGCATGATTTTTTGCAACTGACAAGCCAGGCGTTCTGCCAGTTTACCAGTATGTAAATTAGTGACGAGAATTGAAAATTGCCACCAGAAAACATCCAatcatttgcttttatttaattttaaatgtgatccatttgctgttgttttaaatatatatatatatatatatatatatattactatctCTCTTTTGTActgttctgtttattattactattcattTGGTGTTAGTGCGAGTGTGAACTGTGCGGTAAGACTTGATTTTGTGTTAATCTGTAAGGCTTTTAATTGTCActttattttgctcttttttgtttttttacttggtGAGACGAAATAAACACACGTGATCCAGTGGTGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82933 lncRNA downstream 42283 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 110896 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 117000 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA downstream 117000 35694968 ~ 35696969 (-) False AMCG00020876
TU82874 lncRNA downstream 121509 35650980 ~ 35692460 (-) False G66279
TU83045 lncRNA upstream 106708 35926538 ~ 35937258 (-) True G66416
TU83061 lncRNA upstream 155934 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 415942 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 458320 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 927685 36747515 ~ 36747743 (-) True G66527
AMCG00020889 mRNA downstream 3099 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020886 mRNA downstream 23421 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020880 mRNA downstream 48539 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020878 mRNA downstream 67482 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020876 mRNA downstream 117001 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020885 mRNA upstream 7452 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020888 mRNA upstream 44304 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020900 mRNA upstream 157644 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020897 mRNA upstream 172567 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020899 mRNA upstream 186134 36005964 ~ 36010739 (-) True AMCG00020899
TU82875 other downstream 129414 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 643790 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 643790 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 948664 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 999800 34808774 ~ 34814169 (-) False AMCG00020836
TU83060 other upstream 155934 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1220617 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1245333 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1811970 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 3230386 39050216 ~ 39104867 (-) False AMCG00020970

Expression Profile