RNA id: AMCG00020889


Basic Information

Item Value
RNA id AMCG00020889
length 1284
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00020889
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35801285 ~ 35810870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCCCTCTGCGGAGCGCAGTCGGCAGTTGTTTGCGGGGCTCCGGGACGGCTGTCACGGCGCAGGAGGTCGTGCATGCGTCTCATCGTGGGCCAGTGTCGTATCTGCTCGCACAGGACGTCCGCGCCGCGCACCGGGACGAGGAGGGAGCAGCCCAACCCGCAGACATGTTTCAGTCAATCCCGCGCATGCACGCCCGAGTGGCGACCCTGGGCACTAAAGAGGGCAGCGGGCTGCCGGCCTGGCTGGGCTCCGTGCTGTCCTGGGTGCAGAGCGGCGGGAGGGCCGAGCGGAGCAAAGGCATGATGTCCATCCTGTACAACCAGTGCAGCTTCGTGTCGGGACAGCGGCTGCGGAGGGCGCACCAGATCGGCGAGCTGTACGGCAGCCTGTACTCCGAGCGCTCCCGCCGCAGCCTGATGGGCAACCTGTGGCGGCGCTTGCGGAGCCGGCACCCCCGCACTGGCCACCTGCTGGCCGCGCTGGTCGGCGTCTTCATGTGGGAGGAAGAGAAGATCCGAGACGAGGAGCTGCAGAGGTGTGCCAATGAGATGCAGACGGTGGAGATGCTGAGCAGGATGAGCAAGCAGGGCTGGCAGAGGGACCCGGGCCCCGAGGAGCAGGCCTGGGAGGTCGTCATGGACAGGAAGAACTTCCGGGTCTGGAGGAAGCCCATCCCAGACAGCCACCTGTACCAGTACAGAGTGCTGGGGACCTACACAGATGTCACTCCCCGGCAGTTCTTCAATGTCCAGcTGGACACAGAGTACAGGAAGAAGTGGGACGCCCTGGTGATTAAGCTGGAGGTCATCGATCGCGACGATAAAACTGGGTCGGAGGTGGTTCACTGGGTCACACACTTCCCTTACCCGATGTACTCCCGGGATTACGTGTACGTGCGACGCTACAGCGTGGATCTGGAGAACAATTTAATGGTGTTGATGTCCAGGGCAGTGGAGCACCCCACCGTGCCCGAGAGCCAGGACTTTGTGCGGGTGAGGTCCTACCAGTCCAAGATGGTGATCCGCCCACACACTTCCTTTGATGAGAACGGCTTCGATTACCTGTTGACGTACAGTGACGACCCCCAGACCGTGTTCCCACGCTACTGTGTGAGCTGGATGCTGCACATGGCCACTGTGAAGGCCAGGAACAATGAAATGGAGGTGAAGGACTACCTGTCAGCCCGACCGCAGGAGATCAAGGCCCCCGCCAGCACGGAGCGACACGGAGACAAGAGCCGGGGCCAGCAGCAGGGCCAGGGGCACATGGAGTACGCCTAG

Function

GO: NA

KEGG:

id description
K24141 STARD7; StAR-related lipid transfer protein 7, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82933 lncRNA downstream 29599 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 98212 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 104316 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA downstream 104316 35694968 ~ 35696969 (-) False AMCG00020876
TU82874 lncRNA downstream 108825 35650980 ~ 35692460 (-) False G66279
TU83045 lncRNA upstream 115668 35926538 ~ 35937258 (-) True G66416
TU83061 lncRNA upstream 164894 35975764 ~ 35986696 (-) True AMCG00020900
TU83143 lncRNA upstream 424902 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 467280 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 936645 36747515 ~ 36747743 (-) True G66527
AMCG00020886 mRNA downstream 10737 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020880 mRNA downstream 35855 35759851 ~ 35765430 (-) True AMCG00020880
AMCG00020878 mRNA downstream 54798 35740045 ~ 35746487 (-) True AMCG00020878
AMCG00020876 mRNA downstream 104317 35695136 ~ 35696968 (-) False AMCG00020876
AMCG00020879 mRNA downstream 110945 35679433 ~ 35690340 (-) True AMCG00020879
AMCG00020887 mRNA upstream 3003 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020885 mRNA upstream 16412 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020888 mRNA upstream 53264 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020900 mRNA upstream 166604 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020897 mRNA upstream 181527 35992397 ~ 36000532 (-) True AMCG00020897
TU82875 other downstream 116730 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 631106 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 631106 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 935980 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 987116 34808774 ~ 34814169 (-) False AMCG00020836
TU82986 other upstream 3099 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 164894 35975764 ~ 35986696 (-) False AMCG00020900
TU83279 other upstream 1229577 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1254293 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1820930 37631800 ~ 37632576 (-) True AMCG00020943

Expression Profile