RNA id: AMCG00020890


Basic Information

Item Value
RNA id AMCG00020890
length 7243
RNA type mRNA
GC content 0.53
exon number 22
gene id AMCG00020890
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35958629 ~ 35986692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCAGAGCACAGCAGGCAGTTCATCAACACGGTGTGGGGATGGGGGTGAGTGGGTGCTAAAACGGCCCTGTGGTCAATGAGTATTGAGGAAACCCCAAGGGAGTTTCCTCTTGTGCCTTGTGAAGAGGCCTGTGTCTACTTGCCACCTACAGGGCTTGACAATGTGCCAGAGCACAGCCGTTTGTTAATCATCAATGGTATGCAGCAGGCACCAAGGACGAGGATTGGTGCTTCAGCGTCAGGCCAGATAAAGAAGAAGCAGCATCAGTAAAACTGCTGCCGACGTCAAGGAGAAAAACAGTTCCCACCCTTTACTGCTCCTCTGTCACACAATCAGCCGGACGGACGCACCAGAGGGTCCCACTTTCCACCTTGCCACCCTCTCTCCGAGCTCCACAGCGTCTACTGACCGCCGAgacctccaccccccacccccctcgtCGCTCTCCTCTCTATCCCTCGGGGACAGCAGCCTTGGAATACCCATACGAAGGCTTCTGCGATGGACAATCCGTTGGTGGCCACCTTGTGCCTCCTCTGGGTGTGCGCGGCTGGCATGGAAGGGCTCCATCAAGAGGGGCAATGCATGTTCTACGGGGAGTGTGGCTTCAATCCTGAGGTGACCAATCCCCTGATCAATTCAAAGATCCCCTGTGCCTACCAAGGCCCGGCTAAACCCCTGAACAGTATTGACTATGCCCAGCTAATGAAGGTGTGCCCTATGCTGGACAGGGGGCCAAAAGACACAAGAGTCTGCTGCACCAGCTCCCAGATGAAGTCCCTGCAGAAAAGCTTCGCCCTGTCCAAAGCCATCCTGAACCGCTGCCCCTCCTGTGCCGACAACTTTGCCCACATCCACTGCATCAACACCTGCAGCGCCAACCAAAGTCAGAGTGTCAACATCCTGCGGACCACCAATTACACAACGGATACGGGCGAGCAGAAGGAGGCTGTGGTGGCGTATGAGTCATACCTGACCCAGGAGTTTGCCAATGCCTCCTTCAACTCCTGCAAGAACGTGCGCCTTCCTGCCACTGGGGGCTATGCCATCGGGGTCATGTGCGGCAAGTATGGGGCAGCTGGCTGCACCACACAGTACTGGCTGGACTTCCAAGGCGATGCCAGCAACGGCTTGGCCCCCCTAGACATTGATTTTCGCCTCATGCCTGACGGCAGGCCTGTCCCTCCTGGGATTGTTCCCTACAATGGGCGGGCCTGGCATTGCTACGAGTCCCCATCCCTGGATGGACAGGCCTGCTCCTGCCAGGACTGTTTAGAGGCCTGCCCCGTCATTGTTCCCCCCACCTCTGCATCCGAGTCTTTCAAAATTGGCAGGCTGGATGGCGTGCTGGTGGTGTGTCTCGCCATCTTCGCTGGGGCCAGTCTCTCCTTCTTGGGCTTCCTGCTGGTCAGGAACTTACACCATGGCAAGAGCAAGGAACCGGGGAAAGACAAAAACGGCAACGAGGTGAGGAAAAAGGTGCTCCCTAAAGATGTGACGTGCACCGACAGAAACAGCCTGGCCACTCAGGCGTTCCTCGGCTCTCTCTTCCAACGGTGGGGCACGCTGATGGCCAGCCACCCGATCAAGGTTATTCTTATATCCCTGGCCGTGGTTGTGGTGTTTGCCATAGGCCTCATGCACATCGAGCTGACCACAGACCCTGTCCAGCTGTGGTCGGCTCCTAACAGCCAGGCCATGAAGGAGAAAGATTTCCATGACGCGCACTTTGACCCTTTCTTCCGCACCAATCAGCTCATCCTCACAGCCCCCGGGCGCAAAGGCTATACCTACAATTCACTGGTCTATGGGACAGTGACCTTCGGGGGGGTGATTGCCAAGGACCTCATCCTGCAGCTCCTGGAGTTACAGAGTCGCCTGCAGACCATCCAGTTTTGGTCAGAAGAACTCGGTCGCAATGCCAGCCTCAGCGATATCTGCTTTGCTCCACTGAACCCCAACAACTCGTCGCTCACCGACTGCGCTGTCAACAGCTTGGTGCAGTACTTCCAGAACAACGTGACAAAACTGAACGCTAAAGTCAATATGACTGAGGGTGGGCAAACTAAGGAGGTGGACTGGAGGGATCACTTTATATATTGCGTTAACTCTCCGATGTCATTCCAAGACACCACGGACCTGGCGCTCAGCTGCATGGCAGACTATGGGGCTCCAGTGTTCCCCTTCCTGGCAGTGGGAGGATATGAGAACGAGACCTACACCGATGCGGAGGCTCTGATTATGACCTTCTCCCTGAACAACTACCCGCGCGACAGCCTCAAGTTCAAGCTAGTCCAGATCTGGGAGCAGAAGTTCTTGGACATCATTCAGGAGTACCAGAGGGACCCCTCCACCAATTTCACATTCGCCTACATGGCAGAGAGATCCCTGGAGGATGAAATCAACCGCACAACAGCTGAGGACATCCCCATCTTCATGATCAGTTATGCAGTGATCTTCATGTACATCGCAGTTGCCCTGGGGGAGTACTCCTCCTGGAAGCGTATACTGGTGGACTCCAAGTTTTTGCTGGGATTTGGTGGAATCCTGGTAGTGGGCTGCTCCGTCCTGGCCTCCATGGGCTTCTATGCCTGGGTGGGCATCCCCTCCTCACTGGTCATCCTGCAGGTTGTGCCCTTCTTAGTGCTTGCTGTGGGAGCTGACAACATCTTCATCTTCGTCCTGGAGTTCCAGAGGGATGAGAGAAGGccaggagagaagagagaggaacATATCGGCCGCATCTTGGGAAACGTGGCTCCCAGCATGCTCCTCTGCAGTGCCTCTGAGTGCGTCTGCTTCTTCTTAGGGGCTCTGAGCAGCATGCCGGCTGTGAAGTCCTTCGCCCTGTATGCGGCTCTAGCGGTGCTTATGGACTTCCTGCTGCAGATGTCGGCCTTTGTGGCGCTGCTGTCTCTGGACGCCCGGCGGCAGGACGCCTCTCGCTGCGAGATCCTGTGCTGCGTGACCGTGTCCAGCAGGCCCAAAAAGACCAGGAACGAGGGCTTCCTGCTGCCCGCCATGAGACGATACTACGCCCCCTTCCTACTGCACGGGGTCACCAGGATCACTGTGATGGTTCTCTTCTTCTTCATGTTCTGTTCCAGCATCTTCCTGATGTTCCATGTGACGGTGGGCCTGGATCAGGAGCTGGCCCTGCCCCAGGACTCCTATATGCTGGAGTATTTCAAGTACCTATACAAGTATTTCGAGGTGGGCGTCCCAACTTACTTTGTCACCACGCGGGGCTACAACTTCACGACAGTGAAAGGAATTAATGATGTCTGTTCCAGCGTGGGCTGTGACCCCTTCTCCCTCACCCAAAAGATCCAATATGCCACTGACTTCCCCAAAGAGTCATACCTGGCTATCCCAGCCTCGTCCTGGGTCGATGACTTCCTTGACTGGCTCAATCCCGGCTCTGGCTGCTGCCGGCTGTACACCTCTGGACCTAATATAGGGAAGTTCTGCTCCTCGAATGAATCTGACTGGCGTTGCTTGCTAAAATGCATGCCACTGCCTCTGAACGGCATCCTGAGACCCGATGTGAAGCAGTTCAACACCTTCCTGCCCCACTTCCTCTCCGATCGGCCCAACCTGAAGTGTGCAAAAGGGGGCTTGGGGGCATATGATAAGGCTGTGGTGATGAATGAAGCAGGGGAGATTACAGCCTCGCGGTTCATGGCCTACCACACCCCGCTGACCAACTCCCAGGAGTTCACGGCCGCCCTGCGCACAGCCCGTGAGCTGGCAGCCAACATCACCAAGGGCATGAGGGAGATCCCCGGCACTGCGCCCGACTTTGAGGTCTTCCCATACACGATAACCTATGTGTTCTACGAGCAGTACCTGTCCATCGTTCCCGAAGGCATTTTCAACATCTCTATGTGCCTGCTGCCTACCTTTGTGGTGTGCTGCATCCTCCTGGGCATGGACCTGCGCTCTGGCCTGCTCAACCTCCTCACCATCATCATGATTACCGTGGACACCGTGGGGGTCATGACCTTGTGGGGCATCGATTACAATGCCGTCTCGCTGATCAACCTGGTCACAGCTGTGGGAATCTCGGTGGAGTTTGTCTCTCACCTCACACGCTCCTTTGCCATCAGCACCAAGCTCACCCGTGTGGAGAGGGCTAAGGAGGCCACCACCAACATGGGCAGTGCGGTGTTTGCGGGCGTTGCCATGACAAACCTCCCAGGGATCGTGGTACTGGCGTTTGCGAAGGCCCAGCTCATCCAGATCTTCTTCTTTCGCCTCAACCTGGTCATCACGCTGCTGGGCATGGCGCATGGTCTGATCTTCTTGCCCGTGCTGCTGAGCTACTTCGGGCCGGATGTGAACCGGGCCGTGCTGCTCGAACTGCAGAAGAAAGAGGCCCAGGACTCGGACCCCAGCGATAAGAACTGCTACTCAAACTCGACCTTTGAGAACGCAGAAGAGAAGGGCCCCATCCATGACAACCACTCGCTAAGCAATGGgcagccagacacacacaccacacagacTGATGGAGAGCCTGGGACAGCCACCACCAACTTGTAAATGATCTGCAAAGGACACCCATTTAACCCACAATACCTCCATCGTTCATGGTCGAAACTCGGGACTGACGAGCGGTGAAACACCCTGGAGAGCTGCACTGTAACGGTCAATTGAGGCACTTCAAGACAAggagattaatatatatatattttaggcaAACACTAAACAAAGGCAATTGTAATTGAGTGGGATCTCTGTGGTTGTTGAATGTATTGCACTCCACTCATTGCAGTTCCTGACAAAGGCCAAACACAGTTACCATCTCTGATCAGTGCCAGCACCAAGGGACCAGCATCTGTTCTGAAAATGACTGAACTCCTCCTCCAATGCCAGTATTCATGAAATCTATTGTATATCCATAAATATAGAGAAGCTGTTTAACATTAATTCATGTAATTTCAAGTTCTTCAGAACCATAATGACACAAGTAGAACATTAagagttgtgtttattttattaaagtgtgGAGTGTTGCATCACTAAGGGCCTGGTTCAACACATGCCTTTGATACAGTACATACAGGATTACAGGTGCATGCTGGGCCAATGGGCAGATTCCACACAGCCATGGTCCTTGGCCGTGGGTCAAGGCAGCCCAGCTCTTAATCAGGACTGACCCATTCACGCAGTAGGTTAACCCATTACTCAGGTCAACAGGAGCTTCTGCTTTGGCCAGACCAATACAAACCTGCTGAATGGTGGCTCTCACACAGCAGCAATACATATAGATATCTATAGAAGCTTATGCAGGCTTCAACATCATGAGAAAAAGCAGAGCAAGGAGATTGATGGGACTGAAAAAATGTTGCTTATTATGGAAGCAGAGAGGAAATCTGGGGATGGTATCTATCCTGTTGCGAGCCAGTGTTTTGACAGCTCAAACTTTTGAGACAAGTCTTTCAGAAACACTACTGCAGCTAAGTGCCCACCCCCAccataaagtaaatacaaattgaagtattctaaacaaaaacaaaaaacaatttttaaTCTGTGAGATCACAACTTTGCATAATAAGGTGTATAAACAGTGTCAAAATAATACCCTGGAACAGTGGCATGCAAATACTGTACAAAGACAGCCTGCTTAGTCATGACAGTCCTCCCCTCCAAATCATGTAGCAATATAAACCAAGCAATGGGTTTATTAGAGGATGAAAATGTAGAACTTTAGTCAATATTAGTAGACTTACATTAACTTAATTATGGaaagttatatttttgtagCCATGCAGAATGTGACAGTGTATACATCCCCACTGCATGCACAACTTTACCCCTCAATACACGTAGATGCGTGTGCAGAACCACACCGAGCAAAAGAAACCAACAGTTTCATGAACTTAAACTTGGGTTAAGCAggcacaacatttaaaaatgtcaaaagaaCAAGCCTTCTAAAGAAGTGGGGGAACCAGCAGAACCAGCCATAATTTTTGCACAGCATAAACAACGCCCAACTTCCACCCAAATTACATTAACTGACTCTGGAGAAAGTCAGGATCAGAACTTACACTTGACTGGAGAGTTCCTAAAACAAAGCTCTCTTAGCATGGACTTCAAGTGGATCCCTGGCACAAAGTCTTGCCTGCACTCTCTGAAAAGGTTCTGTGCCGGTCAATTATAGATTCACTGCGGCACCACTGCCCTTTAAGCAGTGGTCTCGTTAATCAAGTCAACTGTTTTAGACTGGGAAGAGGTCTGTTCACAGCACCTCCCTCAGGTCGATGAGCACAAGGTTAAGAGCAGCAGCGGTTTGCAAAATGTAAGGGAAGCACATGAAACCTTTGCTGGATCAAATAAATTAGAGAACCCTCTAAAGCCATCACCCTTAATGCTGGTCCAGCCTTCTTGACAGCCAAGTTGTCTATGTGAAATGCAGCATAACCCCACACCCCAGTGGTCATCCTTCTTCTGGTCAGTGTGGGCCCCACAGTCCATTCCAAGAGAAGCCAGGCCACAGCTGGAGCCCAGGGTCACTGCCAGTAGCAGAACTGCTCCCTTAATTGAGCAGCCACAGCAGGGCTACCAGGTAACACTGTCTGAGGGGCAGCAAGGGGCCCATGAGTGGTGCGAGGCATGACATACCACAGACAAGAGTACGGAAAGCTGGCACCCATCCCCCcgccaccccaccccaccctcagGTCAGCACTTCTCCCACTGCCAGTGGGTCAGCAGATCAGCTCCTTCACAGGGGCCTTCTTCTCACGAGCCTTCatgattttcttctttttcttctgctgctgccGCTCTTTTCTCAGGGGCGCCGAGACCATGCACTTCCACAGCACCGTGTACAGAGCAAGCAGGAAGGTGATGAACAACGCCGCTGCGATGGCACCAGGAATGATGCCGCTCCCGGGTGCCTGGCTGTCCTTGTCTGCGGGGAGGCCTGTGAGGGCGGGGCGCGGGGGGACCGTGGACCCATTTCTGTGCCCCCTAGGAAGGGCTGTCCATGGTTGGTGCTGGGGCTCCCCCTGTGTCAGGTTCACCTCGTCCCCGGAGCGCGTCCTGTTCGGGGAGTCTGTCGGCATTGTCGCGACTGGAGCCGGTCTCTACCTGTGCGGGACAGCCGAAGTCGCTTGCTCATCCCTGGGCGGGTTGGGGACACCCCTGCTGTTAACCAATATCCGACAACGGCGTTCCCGAAAAATCAACACcttgcagaaaaacacacaaccccCCAACGCGC

Function

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82953 lncRNA upstream 101601 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 140850 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 190058 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 197597 35758108 ~ 35761032 (+) True G66319
TU82891 lncRNA upstream 242380 35716045 ~ 35716249 (+) True G66290
TU83019 lncRNA downstream 17927 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 738202 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 819628 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 1086987 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1301822 37288514 ~ 37288841 (+) True G66696
AMCG00020892 mRNA upstream 8454 35937442 ~ 35950175 (+) True AMCG00020892
AMCG00020893 mRNA upstream 21479 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020891 mRNA upstream 32135 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020884 mRNA upstream 98934 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020883 mRNA upstream 131556 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020895 mRNA downstream 34945 36021637 ~ 36029074 (+) True AMCG00020895
AMCG00020896 mRNA downstream 43641 36030333 ~ 36033302 (+) True AMCG00020896
AMCG00020894 mRNA downstream 48179 36034871 ~ 36043978 (+) True AMCG00020894
AMCG00020902 mRNA downstream 114905 36101597 ~ 36114326 (+) True AMCG00020902
AMCG00020901 mRNA downstream 192233 36178925 ~ 36184018 (+) True AMCG00020901
TU82978 other upstream 50227 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 208275 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 793644 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 950307 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1171155 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 268007 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 928123 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4334421 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5064780 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5611531 41598223 ~ 41602113 (+) True G67323

Expression Profile