RNA id: AMCG00020891


Basic Information

Item Value
RNA id AMCG00020891
length 2134
RNA type mRNA
GC content 0.55
exon number 18
gene id AMCG00020891
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35909352 ~ 35926494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgGCATCTCTCTTTCTAAACTCCAGTCTCCTCGGTGCGCAGCGGTCACTCTGCTGCTACGGGCTGTCTGTGCGCATTGGATATCTGCTGGGACTGTTTTCCCCAAGTTGTCGCAGAGAAAAATGCCTGTTTGTTGTCCTCACTGAAGTGTCCCCTGCGCGCATCTCTCTGGGGGGCGATAAGCAGCATTGCGAGAGGACTATAGGACAGGCTGTGCGCCGGGCAGATAAACTATCTCTCCACGCAAGCGAGACTTTGGATCCTGGCACCGGAGCCCGCGACCGAGCGGAGACGCACACGATCACTCCCTGTTCCGCGCGTCCCAGAGCCGCGGCTGATTAGGGAGGGGTTGCTTATTGACGAAAGCAGGCGACAAGTGTGGGTGTTTTTGTCCTGTCCTTTTCTTTAATCACCCACCCGTCTCCTCCAAAGTGTCCGCATCCCCGACCATGGGCAGCATCTCCCGCGACGCGGCGCCCCCGTCCTCCGAGTTGAACCGGGGCTGGCAGGAGTCACAGAAGAACTTCAGACTATTAATGGAGCCCAACCACGTCGACTACCGTTCCCTGAAAAGAGACTACCACCATAGAGTGTTCGTCAACAGGAGTTTGACCCTGGAGAAGATCAAGTGCTATGGCTTCGACATGGATTACACACTGGCAATGTACAAATCCCCTGACTACGAAGAGCTGGGCTATGAGCTGCTGATGGACAGACTGGTATCCATCGGCTATCCCCACGAGCTGCTTCAGTACACATATGACGCCAACTTCCCCACCAGAGGGCTGGTGTTCGACACCATGTATGGGAACCTCCTGAAAGTGGACTCTCACGGCAACATCCTGGTGTGTACGCATGGCTTCACCTTCCTTAAAGGGGCTCAGATTCAGGAGTACTACCCCAACAAGTTCATCCAGAGGGACAACACTGACAGATTCTACATCCTCAACACCCTCTTCAACCTTTCAGAAACCTACCTGTACGCCTGCCTTGTGGACTTCTTCACCAACTGCAAACGATACACCAAcTTGCCGAAAGGCTACAAACACGGAGACCTGTTCATGTCCTTCAAGAGCATGTTCCAGGATGTCAGGGATGCCATGGACTATGTACACGACACGGGAATCCTGAAGGAAAAGACTCTTCAAAACATGGAGAAATACATTGAGAAAGATCCccgtctccctctcctcctgaGCCGCATGAAGGAGGTGGCCAAAGTCTTCCTGGCTACCAACAGTGACTACAACTACACTGAGGCCATCATGAGCTACCTGTTTGACCATCCTCAAGGGCCCAAGCCTGGCACCCCCAAGCAACCCTGGCGATCCTACTTCGACCTGGTCGCTGTGGACACGAGGAAGCCGCTGTTCTTCGGAGAGGGAACGGTGCTCCGTCAGGTCGACACGAACACGGGGAAGCTACGGATCGGCACGTACACGGGTGGGCTGCAGCACGGGACCGTCTACTCTGGAGGCTCCTCGGACATCATCTGTGACCTGCTGGGGGTCAAGGGCAAGGACATCCTGTACATTGGGGACCACATCTTCGGGGACATCCTGAAATCCAAGAAGCGCCAGGGCTGGAAGACCTGTCTGGTGGTACCGGAACTGGCCAAGGAACTGCGAGTGTGGACAGAGAAGAGCCATCTGTTCGAAGAGCTCAAGAGCCTAGATGTTTTCCTAGCAGAGCTCTACAAACACTTGGACAGCGGGAGCACAGAGTCTCCCGACATCAGCGCCATCCAGATCCGAATCAAGagaGTGACCCACGAGATGGACATGTGCTACGGGAAGATGGGCAGTGTCTTGCGCTGCGGCTCCCGGCAGACGCTGTTCTCCAGCCAGTTGATGCGCTACGCCGACCTGTACGCCGCCTCCTGCCTCAACCTGCTCTACTACCCCTTTAGCTACCTGTTCAGAGCCCCGCCTTTACTGATGCCCCATGAATCCACGGTGGACCACTACCCTCTAGACATGAACGTGTCAGAAAGTTCGatgaAATGTGAAAACGCGATCACTACAAATGTGGTGGAATGACTGGCCGGAGCTACGGATCTGTAGCACACAGCTGTTACTGTTACTGACAATCCCACAGACAGGAGGGTCTCAGCCTGGAGGAGGGGAAAGACAGG

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82953 lncRNA upstream 52324 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 91573 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 140781 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 148320 35758108 ~ 35761032 (+) True G66319
TU82891 lncRNA upstream 193103 35716045 ~ 35716249 (+) True G66290
TU83019 lncRNA downstream 78125 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 798400 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 879826 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 1147185 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1362020 37288514 ~ 37288841 (+) True G66696
AMCG00020884 mRNA upstream 49657 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020883 mRNA upstream 82279 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020874 mRNA upstream 158906 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020875 mRNA upstream 172363 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020872 mRNA upstream 492507 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020893 mRNA downstream 4128 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020892 mRNA downstream 10948 35937442 ~ 35950175 (+) True AMCG00020892
AMCG00020890 mRNA downstream 32135 35958629 ~ 35986692 (+) True AMCG00020890
AMCG00020895 mRNA downstream 95143 36021637 ~ 36029074 (+) True AMCG00020895
AMCG00020896 mRNA downstream 103839 36030333 ~ 36033302 (+) True AMCG00020896
TU82978 other upstream 950 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 158998 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 744367 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 901030 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1121878 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 328205 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 988321 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4394619 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5124978 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5671729 41598223 ~ 41602113 (+) True G67323

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004993 False 2250 mRNA 0.46 18 NC_007121.7 17460361 ~ 17484764 (-)