RNA id: AMCG00020892


Basic Information

Item Value
RNA id AMCG00020892
length 3379
RNA type mRNA
GC content 0.53
exon number 14
gene id AMCG00020892
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35937442 ~ 35950175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTCCTGGCCACGGGGGGCGCTGCTGCCTCTCGCGGTTGTATCCCGGCAGCCCTTTCACCCCCTGCTCTCCAGTCGCGCACACGTGGAAGCAATGGCTGCTGACAGACTGCAGTTCCATGAGATGGGCTTAGATGATCGCCTGTTAAAGGCACTGGCCGACCTGGGCTGGGCTCAGCCCACTCTGATCCAGGAGAAGGCCATCCCTCTGGCTCTGGACGGGAAGGACCTGCTCGCCCGGGCCAGGACCGGATCCGGGAAGACAGCCGCCTACGCCTTGCCAATCATCCAGCACATCCTCACGGCCAAGCAGacCGTGCAGGAGCAGGCTGTGCGTGCTCTGGTCCTCGTGCCCACCAAGGAGCTGGGGCAGCAGGTGCAGACAATGATCCGCCAGCTCACCGGCTTCTGTGCCCGGGACGTGCGCGTGGCAGACATCTCGGGCAAAGCGGAGCTCTCGGCACAGAGgcCCATCCTGATGGAGAAGCCAGACATCGTGGTGGGCACACCGTCGCGGGTGCTGGCCCACCTGACGGCACAGAACCTGATGCTGCGCAGCTCGCTGGACATGCTGGTCATCGACGAGGCCGACCTGCTCTTCTCCTTCGGCTTCGAGAGCGACCTCAAAGGCCTGCTGTGCCACTTGCCCAAGATCTACCAGGCCTTCCTGATGTCAGCCACGTTCAACGAGGACGTGCAGGCCCTGAAGGAGCTGGTGCTGCACAACCCTGTGACCCTGAAGCTGCAGGGCTCCCAGCTGCCCGACAGCTCCCAGCTCAAGCAGTACAGCGTGCTGTGTGAGGAGGAAGACAAGTTCCTGCTGATCTACACGCTGCTGAAGCTGGGCCTGGTCCGCGGCAAGACCCTGCTGTTCGTCAGCGCCATTGACCGCTGCTACCGCCTCAAGCTCTTCCTGGAGCAGTTCAGCATCCCGGCCTGCGTGCTCAACTCCGAGCTGCCGGTCCACTCCAGGTGCCACATCATTGGCCAGTTCAACCAGGGCTTCTATGATTACATCATCGCTACCGACGAGCAGAGCCTGGCCGACCCTGGCAGTGCGCAGGAGGGAGAGGGCAGCCAAGGCaccaagaagaagaacaagggcTCAGGGAAAGGAGGGAGGGGAAAAGACAAGGAGTACGGTGTCTCCCGGGGCATCGACTTCCAGAACGTGGCCAACGTCATCAACTTCGACTTCCCGGCCGACATCGAGTCCTACATCCACCGAGTTGGCAGgacTGCTCGAGCCGATAACCCCGGCACTGCACTGACCTTCGTGTCGCACACAGAGCTGCCCCAGCTGACCGAGATCAAGGACGCCCTCACTGGAGACAGCGCCGACTGTGCCCTGCAGCCGTACGGGTTTAAGATGGAGGAGATCGAGGGCTTCAGGTACAGGTGTCGGGATGCCATGCGGTCCGTTACCAAGCAGGCCGTGAAGGAAGCCCGGCTGAAGGAAATCAAACACGAGCTGCTCAACTCTGAGAAGCTGAAGACGTACTTTGAAGACAATCCCCGGGACCTGCAGCTGCTGCGCCACGACCGCGACCTGCACCCTGCCATCATCAAACCGCACCTGAAGAATGTGCCAGAGTACCTCATCCCTGCTACTCTGAGAGGGGTGGCCAATCCCATTATCAGCCGGAAGAAGAAGCGGCGCCGTGCGGTGGCTGGAGCCCAGGAAGGGGGCAGAGCTTTGATCAAGGGTTTTAAACGTCACACGAGAAGCAGCAACCCACTGAAGAACTTCCGCTACTCTGGGAAGCAGGGCAAAGGAAGAGGCGGCCAGAGGACCCAGTCTTAAGAGGCTGACGGGACTGCGGATCGCTTCAGATGCCCAGAAGGACACCGGTCCACCGATCACATTTTGTTCTGATAGGACTGAGCGGAGCTCCTGCGTCTCTGGTCTCGAGGAGGGGCACGGGACCCAAAGACAAGACCAGCTTTGCATGCAGGGGACCCCGCTGCCTTCACACAAACCCGCTGCCTGGCATTCATTAGACCGCTTGTGTCTCTGGCGCTCTGTGGACACTATTGGGGGAAATTTGAGACGTGACACATCCATGTTTAATGCCCGCTGATGAACTCCAATTAGCCGGCAGCTGGAAGTCCCGTTGTTCACGAGAGCCCGTCTTCAGCTCCATCCTGGTCATTTgttctgtgttattttttttccctcactttctaaaataacaaaagactCTTTTCTATTACTATAATGCTTTTGTCACCCCAGACTTAAGCTTTTGTCACTTTAGCCACTGACACTTAGAGTGTGACCCTGAAACCTGCCATCTCTAATGTGTCCACTAGGCGGAGACAGCGGCCATTTAAGAATAGACAGTTGCTGTTGTCAGAAACACCCTGATCATAGATGGTCAGGTTGACATGTTAGCTTTTGCTGGAGATAATAGTATCTTACTGTACGTCATTTaggatacaatttaaattattaattgtggGAGCTACAGCGTTTATGAATCCTCAGATTAAATGTCTTTGCTCTGCCAGATTACCCTTGGCGTGTTGTAGAATTGTGTTCGGATCTGACTGGATATGGGTCCAGCAGGTTGCCGGATAATTCccacagtattcctaccacttGCCCCTTGAAGGTAGTTGATCGGGATTCCAGTTCAGAGTTCAAATTGTGACTGGATTTAGTTTTGACTGATTAGATGCCACTTTtatgccttttttaaatgtgtaaaggacttgacattattatataaacacaatgtttttaattactgctGAAGCATTCCCTTGACTAACTGCAcagaactgtataaaaacaacacagctgcACATAGGCCAAACAAGAACAAGATAAACTTTTTTGGTAGATGAGAGTGTAGGCATCACAGCCAAAGGTCCTGACAGACTTACCTAACACTGTGTCACTGAGGTTAATGTGTCGACTGCAGCCTCTGCACTCTCATCTTGCTTTACTGCAAAGATAAACTGGTGTGTGAAGACCAGTGTGACAAAAGATaggttataaaaaataataatgtgtgtgtgtatgtatgtatatatatatatatatgtatatatatatagcaggtCTTTTAAAGGTAAAGTATGGAGAGCGTCGGCTAACAGACAGGAACTGGAGGTGGTTAGAGTAAGACAAATAAGATTGCCATGTTGGGTAAAATGTCTCTGTGGATCCCCGAATGGTAGTACATCCCTAATCCAGCAGATTTTGAACATAATCGCTTGCCTTTGGAAGTCTCTCTGTGTTGAAGGTCCACCTCAGAAAccagatttaataaaacaaaaaaaagtaaatgtacgCATCCACAGTGTGGTTTATGATTAGTAGCTAATGCTATTTAGAAATCCCAGAAGCAGAGGGACAGAGATGAAGTGGAGA

Function

GO: NA

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82953 lncRNA upstream 80414 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 119663 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 168871 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 176410 35758108 ~ 35761032 (+) True G66319
TU82891 lncRNA upstream 221193 35716045 ~ 35716249 (+) True G66290
TU83019 lncRNA downstream 54444 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 774719 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 856145 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 1123504 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1338339 37288514 ~ 37288841 (+) True G66696
AMCG00020893 mRNA upstream 292 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020891 mRNA upstream 10948 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020884 mRNA upstream 77747 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020883 mRNA upstream 110369 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020874 mRNA upstream 186996 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020890 mRNA downstream 8454 35958629 ~ 35986692 (+) True AMCG00020890
AMCG00020895 mRNA downstream 71462 36021637 ~ 36029074 (+) True AMCG00020895
AMCG00020896 mRNA downstream 80158 36030333 ~ 36033302 (+) True AMCG00020896
AMCG00020894 mRNA downstream 84696 36034871 ~ 36043978 (+) True AMCG00020894
AMCG00020902 mRNA downstream 151422 36101597 ~ 36114326 (+) True AMCG00020902
TU82978 other upstream 29040 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 187088 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 772457 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 929120 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1149968 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 304524 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 964640 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4370938 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5101297 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5648048 41598223 ~ 41602113 (+) True G67323

Expression Profile