RNA id: AMCG00020897


Basic Information

Item Value
RNA id AMCG00020897
length 1812
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00020897
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35992397 ~ 36000532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCGCCCGGAGAGAGTGACGTGGTTCGGGGCGAAGGAAGGAAAAGGGAGTTTCTTCGCTGCCCGACACTCGGATTTTTGTATATCGAGGCAGCTTTCATTTTCGCATCTGTCACTGAACGGGTAGAGGTTGTGTACGTGTGTCTTTACCTGCCTACTTCAAAAGTGGTGTTTTTAAGTCGCGCCTCAACTCGGCGACACGAGAGAAGCGGAGAGGACTTTTCACCCGGCAGGAAAGAGACGACACACTCGGTGAGAACCAGCCTTCAGACGAGGTGGTGTCGCCGCGACGGATCAGTCGCCCAAGATGAAGACGTTGACATTTCCTTTACGGTTACGTCGTGGTAGGAGATAGTGAGCAGGTTACCCCTGACTCAGAGGCACCAAGTGTTACTGTTGCTCAGTTAGTGTGATTTCACTGTATAGCCGCTGTGCGAGTAATGGAGTTTCCTAAAGACTCAAATGTAGGGACTCGAGTGAAGGGAGGGTTGTGGAAACCGGCATAGCGGTCGTACACCGAGCCTAACCCCGCATCCCCCGGTCCTGCTTATTTGAAGATCCCCAGAGTTTGCAGCTTAAACGTCGACCCTTTTAAATGCCACCCCCGGGCTCTGAAATGGGGAACGTAAACACGGCCACTAACGAGCCAGATCTGTGCCCGGATACGAAAGCCCGAGATCGCAGGTCTGCAGGGTCCGAGACATGTGTGTCTTCATCATCTTGTCATATTAATTCAATCGAAACAACAACATAAGTGTGTGAGCTGAATGAGCGCAATCCACATGCTAAACAGTCTGAGTGTTTGGGTGCAACACATACTGACAACGACCCGTCCCCAGTTTGTTTTACACGTCAGTGCAGGATACTGCCATTGCATGGTtgtgtttttaagttatttgaTTGTTGCTTTAGTTAACGTGCATGTTCGGCTATCGATCCGTATTGAGCTACTTCTTAAAAGAGAGTGTAATGGGGTCACATAGGGCTTGGCTTGGCTTGGGGGGCTCGACTGACTGAGTGAGTCATGCTTTCACAgtgattgtttttgtgtctgtttcagGGGTGGCTTGAAGGACAAGCGACTGCCTGTCTGAGTCATTATGAAGCTGTTCAGCCTAAGTGTCCTCCACAAGGGAGCCAACAAGGCTAATCTCCTCAAAGCTGCCTATGATTTATCCTCCTTCAGCTTCTTCCAGAGGTCCAGTGTGCAGGAGTTCATGACCTTTACAAGCGCCCTGATCGTGGAGCGCTCCTGCCAAGGCAGCCGGGCGTCAGTCAAGGAGCAAGAGTATCTGTGCCATGTGTACGTCCGCAACGACTCCCTGAGCGCCGTGCTGATTGCTGACAATGAGTATCCCTCCAGAGTGTGCTTCACCCTGATGGATAAgGTATTAGATGAATTCTCCAAACAGGTGGACAGTATAGACTGGCCCTCGGGCTCCCCAGCTACCATCAACTACACTGCCCTGGACAGCTACCTTGCCAAAtaccagAATCCTCGGGAGGCTGATGCCATGACTAAAGTCCAGGCCGAGCTCGACGAAACCAAAATCATCCTGCACAACACAATGGAGTCATTgttggagagaggagagaagctGGACGATTTAGTGCAGAAGTCGGAGCACTTGGGAAACCAATCCAAAGCCTTTTACAAGACTGCTCGGAAGCAGAACTCTTGCTGTGAGGTCATGTGATGGTCGGAGCCCGGCTCGGTGGACCTGCCTCTCTCCTGGACGTCTGCAGCCTTCAGAGCCTTCACACCCCGGCCTCGTGTAGCCTGTACAGCGGAGAACTCGcccagggggtggg

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08516 YKT6; synaptobrevin homolog YKT6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83061 lncRNA downstream 5701 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 55139 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 220711 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 289324 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 295428 35694968 ~ 35696969 (-) True AMCG00020876
TU83143 lncRNA upstream 235240 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 277618 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 746983 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 850538 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 868885 36869417 ~ 36870155 (-) True G66536
AMCG00020900 mRNA downstream 5685 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020888 mRNA downstream 112309 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020885 mRNA downstream 145340 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020887 mRNA downstream 173263 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020889 mRNA downstream 181527 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020899 mRNA upstream 5432 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020898 mRNA upstream 41327 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020904 mRNA upstream 90009 36090541 ~ 36100893 (-) True AMCG00020904
AMCG00020906 mRNA upstream 114097 36114629 ~ 36117694 (-) True AMCG00020906
AMCG00020905 mRNA upstream 127830 36128362 ~ 36143093 (-) True AMCG00020905
TU83060 other downstream 5701 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 172567 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 307842 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 822218 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 822218 35162814 ~ 35170179 (-) True AMCG00020853
TU83279 other upstream 1039915 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1064631 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1631268 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 3049684 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5599869 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile