RNA id: AMCG00020899


Basic Information

Item Value
RNA id AMCG00020899
length 1210
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00020899
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36005964 ~ 36010739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTCTACGAACCAATTACaaccaagaagaagaaaaaaactAGTGCCCTTTCTGTGGCCGAAACCGAGGAAGGGTACTTTCATGTTAAGAAGCCATTGGGGAAGAAGGTGTTTGTGCCAGCAGGAACCCATGGCACCTTTCACACTACGAGGCTGTTCCAGAAGCGGCATCAGGAAAGGTCGCAGTTTGATCTGCAGGACCCCCATTGCCACCTGCTGGACAATGAATACAACTCTCTGCAAGATCCTCACCTGAAGGAGTTCTACAGCAACAAGACCAGACAGCGGAGAATGTACAAACATGGCCTCCTCACCGCAGACAAGAAAGTAGCGTGCTCCTTGAAGGACTATAATAGCTACTGTGACTACCTGAGGTCCGTCAAGATGGATTGGGACAAGAACTACATGAAGCAACAGAAGGAGCTGGTGAAACAGTTCCTGATCCTACAGGAGGAAGAGAAGGTCCCGCAGGACATGTCTGTCCAGGACGTGACGGAGTGGCTCCTGGAGCAGGGCTGGATTTCATTCGGGCAGCAGGGCGAGGCTCACAGGCTTCGGAACCAGCTGGGCAATCGCCGGACAGAACAGGCCATGAAAGCCGCTGAGCAGGCCTGGAAGGCAAACCAACGCCAGATGCTGCAGAAAATGGAGACGGAGTCACGAAGGGAGCTGAGGCTGGAGCAGCACTGGAAGAAACCCTCCATGAAGCATGAGGCGCCGAAGCCGGTGCGAACGGTCTCTCAAACTGGCAGGAAAACAAGTAAGGACTGTGACACCCCGACACTCACTAGAAAAATCCACCTCAAACCCTGTCAGATTAGACTGCACTGTTGAGACTCCTAATGTGGAGCAGAATAAGCATTAGACTGGGGGTCTGACTCGTCTCACCGCAGTCCATGTTCTGAACTCCCTGTGTTTCTCCTCTCTTTCACCACAGAGACTCTCTCCACTGTTGAGAAAGAGTTCACGCTCTACCATTCAAAGCCGACCCCGCCGGCACAGCCGTCTGACGAACCCCGTAGCAGCCCAACCCCTCACAGCAGCCTGACCGCTAAAAGAAGCCCCCGCAGCAGCAAACTGACCCCTCACAGCAGCCCCAGCACCGGCCCAACCCCTAAAACCAGCCCGACCCCTAAAACCAGCCCGACCCCTAAAAGCAGCCCAACCCCTCGCAGCAAACTGACCCCTAAAAGCAGCCCGACCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83061 lncRNA downstream 19268 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 68706 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 234278 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 302891 35702763 ~ 35703073 (-) True G66284
TU82880 lncRNA downstream 308995 35694968 ~ 35696969 (-) False AMCG00020876
TU83143 lncRNA upstream 225033 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 267411 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 736776 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 840331 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 858678 36869417 ~ 36870155 (-) True G66536
AMCG00020897 mRNA downstream 5432 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020900 mRNA downstream 19252 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020888 mRNA downstream 125876 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020885 mRNA downstream 158907 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020887 mRNA downstream 186830 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020898 mRNA upstream 31120 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020904 mRNA upstream 79802 36090541 ~ 36100893 (-) True AMCG00020904
AMCG00020906 mRNA upstream 103890 36114629 ~ 36117694 (-) True AMCG00020906
AMCG00020905 mRNA upstream 117623 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020903 mRNA upstream 164610 36175349 ~ 36178261 (-) True AMCG00020903
TU83060 other downstream 19268 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 186134 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 321409 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 835785 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 1029708 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1054424 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1621061 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 3039477 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5589662 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile