RNA id: TU83060


Basic Information

Item Value
RNA id TU83060
length 2235
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00020900
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35975764 ~ 35986712 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGCGCGTTGGggggttgtgtgtttttctgcaagGTGTTGATTTTTCGGGAACGCCGTTGTCGGATATTGGTTAACAGCAGGGGTGTCCCCAACCCGCCCAGGGATGAGCAAGCGACTTCGGCTGTCCCGCACAGGTAGAGACCGGCTCCAGTCGCGACAATGCCGACAGACTCCCCGAACAGGACGCGCTCCGGGGACGAGGTGAACCTGACACAGGGGGAGCCCCAGCACCAACCATGGACAGCCCTTCCTAGGGGGCACAGAAATGGGTCCACGGTCCCCCCGCGCCCCGCCCTCACAGGCCTCCCCGCAGACAAGGACAGCCAGGCACCCGGGAGCGGCATCATTCCTGGTGCCATCGCAGCGGCGTTGTTCATCACCTTCCTGCTTGCTCTGTACACGGTGCTGTGGAAGTGCATGGTCTCGGCGCCCCTGAGAAAAGAGCggcagcagcagaagaaaaagaagaaaatcatGAAGGCTCGTGAGAAGAAGGCCCCTGTGAAGGAGCTGATCTGCTGACCCACTGGCAGTGGGAGAAGTGCTGACctgagggtggggtggggtggcgGGGGGATGGGTGCCAGCTTTCCGTACTCTTGTCTGTGGTATGTCATGCCTCGCACCACTCATGGGCCCCTTGCTGCCCCTCAGACAGTGTTACCTGGTAGCCCTGCTGTGGCTGCTCAATTAAGGGAGCAGTTCTGCTACTGGCAGTGACCCTGGGCTCCAGCTGTGGCCTGGCTTCTCTTGGAATGGACTGTGGGGCCCACACTGACCAGAAGAAGGATGACCACTGGGGTGTGGGGTTATGCTGCATTTCACATAGACAACTTGGCTGTCAAGAAGGCTGGACCAGCATTAAGGGTGATGGCTTTAGAGGGTTCTCTAATTTATTTGATCCAGCAAAGGTTTCATGTGCTTCCCTTACATTTTGCAAACCGCTGCTGCTCTTAACCTTGTGCTCATCGACCTGAGGGAGGTGCTGTGAACAGACCTCTTCCCAGTCTAAAACAGTTGACTTGATTAACGAGACCACTGCTTAAAGGGCAGTGGTGCCGCAGTGAATCTATAATTGACCGGCACAGAACCTTTTCAGAGAGTGCAGGCAAGACTTTGTGCCAGGGATCCACTTGAAGTCCATGCTAAGAGAGCTTTGTTTTAGGAACTCTCCAGTCAAGTGTAAGTTCTGATCCTGACTTTCTCCAGAGTCAGTTAATGTAATTTGGGTGGAAGTTGGGCGTTGTTTATGCTGTGCAAAAATTATGGCTGGTTCTGCTGGTTCCCCCACTTCTTTAGAAGGCTTGttcttttgacatttttaaatgttgtgccTGCTTAACCCAAGTTTAAGTTCATGAAACTGTTGGTTTCTTTTGCTCGGTGTGGTTCTGCACACGCATCTACGTGTATTGAGGGGTAAAGTTGTGCATGCAGTGGGGATGTATACACTGTCACATTCTGCATGGctacaaaaatataactttCCATAATTAAGTTAATGTAAGTCTACTAATATTGACTAAAGTTCTACATTTTCATCCTCTAATAAACCCATTGCTTGGTTTATATTGCTACATGATTTGGAGGGGAGGACTGTCATGACTAAGCAGGCTGTCTTTGTACAGTATTTGCATGCCACTGTTCCAGGGTATTATTTTGACACTGTTTATACACCTTATTATGCAAAGTTGTGATCTCACAGAttaaaaattgttttttgtttttgtttagaatacttcaatttgtatttactttatggTGGGGGTGGGCACTTAGCTGCAGTAGTGTTTCTGAAAGACTTGTCTCAAAAGTTTGAGCTGTCAAAACACTGGCTCGCAACAGGATAGATACCATCCCCAGATTTCCTCTCTGCTTCCATAATAAGCAACATTTTTTCAGTCCCATCAATCTCCTTGCTCTGCTTTTTCTCATGATGTTGAAGCCTGCATAAGCTTCTATAGATATCTATATGTATTGCTGCTGTGTGAGAGCCACCATTCAGCAGGTTTGTATTGGTCTGGCCAAAGCAGAAGCTCCTGTTGACCTGAGTAATGGGTTAACCTACTGCGTGAATGGGTCAGTCCTGATTAAGAGCTGGGCTGCCTTGACCCACGGCCAAGGACCATGGCTGTGTGGAATCTGCCCATTGGCCCAGCATGCACCTGTAATCCTGTATGTACTGTATCAAAGGCATGTGTTGAACCAGGCCCTTAGTGATGCAACACTCca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83045 lncRNA downstream 38506 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 204078 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 272691 35702763 ~ 35703073 (-) True G66284
TU82877 lncRNA downstream 278795 35694968 ~ 35696969 (-) True AMCG00020876
TU82880 lncRNA downstream 278795 35694968 ~ 35696969 (-) False AMCG00020876
TU83143 lncRNA upstream 249076 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 291454 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 760819 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 864374 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 882721 36869417 ~ 36870155 (-) True G66536
AMCG00020888 mRNA downstream 95676 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020885 mRNA downstream 128707 35827282 ~ 35847057 (-) True AMCG00020885
AMCG00020887 mRNA downstream 156630 35813873 ~ 35819134 (-) False AMCG00020887
AMCG00020889 mRNA downstream 164894 35801285 ~ 35810870 (-) True AMCG00020889
AMCG00020886 mRNA downstream 185216 35779043 ~ 35790548 (-) True AMCG00020886
AMCG00020897 mRNA upstream 5701 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020899 mRNA upstream 19268 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020898 mRNA upstream 55163 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020904 mRNA upstream 103845 36090541 ~ 36100893 (-) True AMCG00020904
AMCG00020906 mRNA upstream 127933 36114629 ~ 36117694 (-) True AMCG00020906
TU82986 other downstream 155934 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 291209 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 805585 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other downstream 805585 35162814 ~ 35170179 (-) True AMCG00020853
TU82585 other downstream 1110459 34862619 ~ 34865305 (-) True G66054
TU83279 other upstream 1053751 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 1078467 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1645104 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 3063520 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5613705 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile