RNA id: AMCG00020901


Basic Information

Item Value
RNA id AMCG00020901
length 2380
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00020901
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36178925 ~ 36184018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCCTGTTTTATAtggtgcttttttatttttaaacgtgCAGCTACGACTGTGGAGCGGAAAGAAGGTGTTTCGCAGCACAGCCAGGGATGTCAAGTTTGAAAAGCCCAGGAGCAATGGCGTACGAGTCGGAAGCAGTACCTTACCCTGGATATCCTTCCAACTTCTGGTATCCACCCTCCCATTCGGCCAGTCCATATTCCAATGCATATCCggcagggtcagaggtcaacGGGCATGCAGCCTATAACCCGCAGGCGATCCCCGGCTACCCTAACGGAGTCTACAGCCCGGCACAATACCCCAGTCCCCTCCATCCCACGAACCCCTTCTACTGCGGTGACGCCCCCCCAGGACAGCCCCCCTACCCATCCCAGGGCTGCCCCGAACCCCGGACCACAGGACCGGGGGGACACCCGGTCCACCATCCCCGGTACCCCGTCCAACACTGCCAGGGGGGTCCTGGATACCCAACTGGACCCTATCATCACTACGGGGACGGAGTTCATCCTATGCCCCAGAACCATGCATATCCCACCCAGCCTGGACTGCACTCGAGGCCCCCAGCGGAGGCCTGGTCGCACACTGGGGGCTACGGGCCGCCACCACCTCcgccccagcagcagcagtggccgCAAGGACCCCAACCTCCGCCGAGCCACTACGGGAACCCCTTCCTCTCCCCACAGCCCCCATCCTGGCCTGGTCCCGGCCCGACCGCGCCACAGTATGACCCGCAGGACCCTCAGTATGCAGGCTACCCCCACCCAAAACGGCCTCCTCAGCCCACTGGACCTAAACCCCGGCCGCCGCATCCCAGCCCAGGACAGGCCGGGGAGTACAGCGCGCCCCCTCAGCTGTACGTGAAGACCGGGAAGGCCCAGGACCCCACACCCTCTCAGGGGGAGCCACCGCCGCTGCCACAGGGACCCACCGGCCCCCCGCTGAGTGACAACCCCAGCCTGGCGCACGTGCAGCAGGTGCTGGCCCgggtggagctgctgcaggaggacGTGGATGTGTTTGTGGGCTACAAAACGGACAAGAGCTACCGCTATCTGGAGGAGCTGCTCACCAAGGAGCTGCTGGAACTCGACTCCGTGGAAACCAAGGGGCAGGAGGCCGTGCGGCAGGCCAGGAAAGAGGCCGTGCAGAAGGTCCAGGGCATTCTCGACCGGCTGGAGAGGAAAGCTTTCTGAACGCGTGCAGACGCATCTTCCCCACACTCACCCCTAGCACTGCCACAGTGACCCACTTCTCCAATAAACCCCCACTTGTTCCCAGCCCACTCCCACCCACACTGCAGTTCGGTAGGAAGGGGCGCCCCTCTCTTATTTGAGGTTTCCCCAAACACCACCGTAGCGgtcatgtattattttcacttattattattatttttgttttgtttgggtggCCTACCAGCATTGGCAGAACCTAGAGGAGCTGCTGGAgattcctgttttgttttggtcctCATCTGctctcctttgttttgttttttttccttcccccctGCTAAAGCATGTCCTGGCCACTTATTTTCCACCTTTAAAAGCTGCGTTATTCTTTCCACAGTGTCACACTCGTTGATTGATCGCCCCCAATGGAGAGGGTGAGCGCTGATGTGTGTAGCTGTAGCGGTGGGGGTGGGCTGTGAGAGTAGGCCTTCTAAATGCGGACGTTGAGAGAGGGAGGACGACGGGGTATGCTTGTGTTCCAGCAGCTAACAAAGTCAATCCGAGGAATCGACAATCTTGCATCACTTCCTGTGTCTTATTGACACTCCCCACAGAGTAGGTACCCACTCTTCCAATGGGCTATTCTGGCCAAACGTCAGAAACCCATGTCCAATACTTTGATCATTCCTTCAACCAGCCCGGATGTCAATTTACAATTTTTCCTTAATGCAAAGCttgaaggagggagggagggagggagggagagaggaaaaatctaaacaaaaaacaacctgcCGATATTTTGAAACTACCAAATGAATATCCCAgaagagtgttttttttatagactCCTAGATGCACCAAAGTCATAATTTCTGTGATCGTACTgttagaaaagtatttttacatatttcaatcaccaaggatgttgtttttatttttttaaacgggTACCATAATATTGGCAGGTGCTATTTGTTGTCTCCCCACCCCTCCACATGAAATAACTGCATGAGCTTTGCATGGGGGAAACATGTTAAGTGTGACCGATTGTTATGTCTCTTCTCTTTGTACAGTAAGGTCCCTCAGAGTCTCAAGGGACAGCCGCTATGTAAGCCATTGGATTCTTTAATAAAAGATTTCAATTTGTACACAACGATGCGTTATATTTGACACATAGAAGGCAGCAATCGCAAGTACCAG

Function

GO: NA

KEGG:

id description
K09558 BAG4; BCL2-associated athanogene 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83019 lncRNA upstream 104504 36004619 ~ 36074421 (+) True G66395
TU82953 lncRNA upstream 321897 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 361146 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 410354 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 417893 35758108 ~ 35761032 (+) True G66319
TU83173 lncRNA downstream 540876 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 622302 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 889661 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1104496 37288514 ~ 37288841 (+) True G66696
TU83368 lncRNA downstream 1117230 37301248 ~ 37301598 (+) True G66700
AMCG00020902 mRNA upstream 64599 36101597 ~ 36114326 (+) True AMCG00020902
AMCG00020894 mRNA upstream 134947 36034871 ~ 36043978 (+) True AMCG00020894
AMCG00020896 mRNA upstream 145623 36030333 ~ 36033302 (+) True AMCG00020896
AMCG00020895 mRNA upstream 149851 36021637 ~ 36029074 (+) True AMCG00020895
AMCG00020890 mRNA upstream 192233 35958629 ~ 35986692 (+) True AMCG00020890
AMCG00020907 mRNA downstream 3731 36187749 ~ 36194843 (+) True AMCG00020907
AMCG00020908 mRNA downstream 12429 36196447 ~ 36203860 (+) True AMCG00020908
AMCG00020910 mRNA downstream 21312 36205330 ~ 36226349 (+) True AMCG00020910
AMCG00020909 mRNA downstream 50915 36234933 ~ 36241220 (+) True AMCG00020909
AMCG00020914 mRNA downstream 667477 36851495 ~ 36869578 (+) True AMCG00020914
TU82978 other upstream 270523 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 428571 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 1013940 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 1170603 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1391451 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 70681 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 730797 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4137095 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 4867454 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5414205 41598223 ~ 41602113 (+) True G67323

Expression Profile