RNA id: AMCG00020903


Basic Information

Item Value
RNA id AMCG00020903
length 1320
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00020903
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36175349 ~ 36178261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGCCATACCAACTGTACTGTAGCGCTGAGTGAATACAGTGGGTAGAAATTAAACTAACGCAACGAGGCAGGTTATTTCCCTCAAAGTGACAACACGTTCACAAAGGTTAAATTAAAGGGTTAAATTAAAGCGGAAGTGCTGCTCTTTTCTCGGACCCGCACTTCCTGTTGCGAGAGGGCTACACATTTTGAATGATTCATGGGCTGAAACGGAAAAATAAGGctctttaaaattaacatttcagcATCCAGATAGCATAGTGGACCGCTACTCAGGACCATGAATTACATGCCGGGGACAGCGAGTCTCATTGAAGACATTGATATGTTGTTAATGGATGCGATGAAGACCAATGGCCACAGTAAGCTTATGCGCACGCCTCTTCGCTGCTTCATTTCGTCTTCTCTATTTGCAGAAAAACATCTAGTCCTCTTGCGAGACGGCAGGACGTTAATTGGGTTTCTGAGAAGCATCGATCAGTTTGcaAATTTAGTCCTTCATCAAACAGTTGAGCGCATCCACGTTGGCAAGAAATATGGAGACATCCCTCGAGGAATATTCATCGTGAGAGGGGAGAATGTGGTTCTGCTTGGGGAAATCGACCTGGAGAAAGAGAGTGACACAGTCCTGCAGCAAGTATCCATCGAAGAGATTTTGGAAGAGCAGAGGTCTGAACAGCAAGCTAAACAGGAGGCGGAGAAAGTAAAACTCCAAGCACTTAAGGACCGTGGACTCTCTCTCCCACGAGCAGACACGTTGGACGAATACTGATCCGTTTTgtttttgggttttgtttttgtttttttaaccggACACTTCAGTTTTAATATCAGATGGCAACATTTTTGggggaaatcaaaagaaaaggacatttaataatggtcagagagagaaaaagaagaggggggtggggggacggAACGACAATGACATGCCTAAAAATAGAGCCGGGAATGTTTCATTTTGTCTTCAATtataccattttaatttaattgaaaataatggatCTGAACCAGCGTCTTTCTTTACCTTTGATATCTGATGTCACATTGGACTTGAGGGCAAATGCAACAAAAGCACTTGTATTAAGCTGCTGTAGTTATTTTGATATTAtgtttctaaaaaaacaacaaaacattgaaaatgactTATAGTTTTTTGTACTATGCCGTCAAGTTGAATTAATGGTGGCTTTCTTTTTTGGTTACCATGTAAATAAAGAGAGCAATCTAAGAACTGTAAAGAAACTAAACGATGATGaatcttattattttgttaataattgtCAATGTTTCATTTCCAAGTGGTTGCTGGAGG

Function

GO: NA

KEGG:

id description
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83061 lncRNA downstream 188653 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 238091 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 403663 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 472276 35702763 ~ 35703073 (-) True G66284
TU82880 lncRNA downstream 478380 35694968 ~ 35696969 (-) False AMCG00020876
TU83143 lncRNA upstream 57511 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 99889 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 569254 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 672809 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 691156 36869417 ~ 36870155 (-) True G66536
AMCG00020905 mRNA downstream 32256 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020906 mRNA downstream 57655 36114629 ~ 36117694 (-) True AMCG00020906
AMCG00020904 mRNA downstream 74456 36090541 ~ 36100893 (-) True AMCG00020904
AMCG00020898 mRNA downstream 109276 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020899 mRNA downstream 164610 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020912 mRNA upstream 68322 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020911 mRNA upstream 82732 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020913 mRNA upstream 106621 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020915 mRNA upstream 694073 36872334 ~ 36874433 (-) True AMCG00020915
AMCG00020917 mRNA upstream 699214 36877475 ~ 36894127 (-) True AMCG00020917
TU83060 other downstream 188653 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 355519 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 490794 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1005170 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 862186 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 886902 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1453539 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2871955 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5422140 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile