RNA id: AMCG00020904


Basic Information

Item Value
RNA id AMCG00020904
length 4730
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00020904
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36090541 ~ 36100893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGGGGAAGGGAAGCAGAGATTGGAGGGAGTGAAACTGAGCTGATCATTGGAGAGGGGCAAGAAGAATCTACTGACTTCCTGAAAATCTGCCCCCAGTACGGAGAGAGCGCCTTTAACCCCTATCGGTTGGGGACTGTAATGCTGTAACCCACCCTACCACCTCCCTGGACCTGAGCAAGCTGCCTCTTTGCCTCCCCGAATCCAGTACATGTCTTCTAAGTGGGCTCGTCTGGAAAACCCTCTCACTGCACCTGTAGATGCCTGGATGTCTGGTCACTCCATTTAACGTGTTGTTTGCAAACACAGCAGACCGGAAACACGAGAGGATGTGGGCTGGCTTTCTGTCAAGGGCGTTGGCTTAACAGATCGCCGCTTGTGGAGTCAGGCAGTGCCCACAGTAGCGCATAACTGCGGACGCTACGCGATGCCCTCACTCAAGCAGGAAGCACCTGGATTAACCTCTTCCCCTTGCCCGGCCTCCCGCTCCCAGGGGGACGGGGCATCTCTGTGATGGGGTGGCAGAAGAGGTTCATCGCATGTGTTGACAACGGACTCCTGTGCTGTGGTGAAAGCGCGTTTTCTAACCGCCCCTCGCTCCCAGGCATGGCAGGCCTCAGTTGTTTCATGGGCTCGTGAACTTTCCTGCTCTGAGAACTCATTAAAACCACGCCGAACTGAGTTCCCCAAGCCCTTCCCAGTTTGAAGACATCTTGCACAGCGTTGGATAACTCCTGTTGAGTTTTTTCCCCTCGCTGTTGAGTCACTCGCGGATGGGGAACACTACACTATGCACTTCCTCACACACGTAGCTCTGGTGAATGCTGGTCTGCCCCTGGGACCCTCGTAGCTTGCACTGAGGCTCCTGCAGGACTCGGCAGAGGGACCCAAGCCTGAGGCGAGACAGCACCTGGAGGCAATGGAAGGAAATAACGGCAGCCTGGCAAAGGAAGAGGGTTTTAATGGGCTAGCGCAAGAATGCAGGAAGACAGAGAACCTAACCAATGGCTGCTCCAATTCCATACCTCTTCCCGGGCCGGGCCGCCTTGCGTGTGTCGGTTCCCCCTGTCTGGATGAGCCGGTGGCTCGGCGAGTTCTCCTCACAGCTGTTTGTCATTTCAGAGGTGAGCCCTGAGCTGCTGCAGGCCCGGGAGCAATGGGATGCCCTGGAGTGCATACAGCCAGTCCTCAACGAAGACCCCATTGGACACACTCCGCTGATCTCCTTCAACGAGGCACTGCAGCACTTCCAGACCACCGACCTCTCGGAGTGCCTGAAGAACATCCAGCCCACGCTGAGACGGACTGGGCTGGCTGCCCTCACACACTTCCTGTTTGGCCCCCCTCGTCTCCACCGAGAgctgcaggaggagagagacctgGTGTTCGCCATCGCGCAGTGCTCTCTGGACCACAGCCAAAAGGTCCACACACGAGTGCTGCAGACCATCTACAAGAGGCTGACGGGCAGCCGGGCGGACTGCCCTCACTATGGCCCCCACTGGGAAACTCTGGGATTCCAGGGGATGGACCCGGCGACAGATCTGCGGGGCACTGGCTTCTTGGGCTTGATGCATACCCTCTACCTGGTCATGGACCCAGAGACCCTGCCTCTGGCTCGAGACATCTACAAACTCTCCCAGCACCAAACCCAGAACTTCCCCTTCTGCGTGATGTCCATTAACATCACTCGCATCGCCCTCCACGCTCTGCGAGAGGAAGCCCTGACCAAGGAATGTAACCGCCGTCAGCAAGTTGTGGGGGTGCTGAATGATTTCTACGTTGCCACCTTCCTGAGCCTGTACCAGACCTGGAAAACGCAGAACAAGACCATCTCCGACTCGGGCTTCGTTCTGAAAGATGTGGAAACCTTTGCCAAGAAGAACCCCAAACAGCTCCTGCGCCGGCTGGAGGGGTTCCTGCGCGAGAGGCGGACCGGGGGCGGCGGCGGCCTGGCACTCGAGTCCGCTTCCCAGAACCCCTCCCCCAGACTGGGCCCCTCGGGGGTGCGCAACGGGGGGAAGCAGATGCACTTCACGGGCGTGTGCGAGTTGCCGCCGGAGATGGAGGGGGAGGCCCGGCTCATCTGACCGGGGGCGATGGCAGGAGGCTTGGCTGGGAGCTTGCAGTGGCCCCTCGGCCCGTCTCTGTCTGATCACCGCCACGCTCACACAGGCAAGGAGGGGGGGACTTTGACTGCATTGCAGTACTGTAGGATTCCCACGTGTCCGGGAAGGCCGGCCAGGAAGTCTGCCAAGCCTGGAAACACAGTGGGAGCCCTGCAGGCGTCTCCAAAGAGGGTTTAAGGCTGCAGGATAGCAAGGCCTCTGATTGTTTGATGGCAGGAACCTTCTCAGCTCATCGTCCCATTGACTACAGGGGTCATCGTTTGGCCCGGCTAATGCACTACGTAGGCTCAACTATTACTGCTACAACAGATagtcttaaaaacacaaaactgcttTAGAGAAAGCTGCTCATATTCACAGTCCAGGTGAGGCATACCGGCTCAGTCTTCATTTCACGTGAGATGTACCTAATCCCACTTTTACAGTTGCTGCGAGGGGAATGAATGCGTTTTTTCCCCTCAGCTTGCTCTAACCTTCATAGTGATTCTATGTTTCTTGTCCGCTTGCTTGGTCCTCCGGTGCAAGATATCCACGGTCAAGGGGAGGCCGGTCCCTTTTCTTGTGATAAGATAGTTTTCCATGCTGAAAAccaggtggtgggggggcaaaGTGTGACTGAATCCATCTGTTGCAATGAGATTAACCTCTCCTTCACCCGGAGAATAAAGCCTTCACTAGAGCCCATAATTGTAACTTCTGCACCCCGACCGCGTGCTTGAGATGCGCCTCGCTTACGTGAACCCGTGTGTTCCCAGCACAGAAACACCCACAATGCTTCTCCCAGTGTGCTCATCTTGGGAAGAAAACTCAAcgtgcgtgtgtatatatattttttcaggtgTCAGTCTTCGTATGCAGTCTAGGTATTTCAGTGTTCAGGAGTCCAGCACTCCCATAATGCACCACTGTGGTCAAACAGCAGTCACCTATGGATATTCTGTCAGGTAGCACTGTAGCTTTGTAGCTCTAAATCAGtgactgttttattttgcttgtgaAGTTTGTCCTATAGTTTTCAAATAGCGATGTGTGTTCAGATACAAGCTCTCTCGGTGGATATATGCATTGTAACCCAGTACAACTCTGTGGACGTCTATACAGACTGTCAAATCACACCCCCCATTCACACACAGCTGCATAGACCCGACCCCTGTTCAATACCAGCCGACCACAGTTGTTtttcacagaacaaaacaagcaagaaacacaaacaaaaaaggatcAAGACCAATATTTCCTTGAATGTGTTGGGAAATCTCTTTTTCAAAAAGTCTTGCTGGCTTTTTAAGAATATGCTTGTACCACTTGTGAGCGTGCCAGTGACAAGCTGGAACCGAAGCAGAGATTGCGTGTTTGTGCGATCTGAGAACCGATCTCTTGGGGTTGATTATGCACCTTACTGACCACGTGTGAGGGCGCGAGATGAGCCGTTACCCACCTCGTGCACTGATGGGATTACTGGGAGACCCGTGCCGAACACTGCGTCTCCATTACAAAGGCCAGGCTGTCTGGCGCAAGAGATGCTTGGCGCTTCAAAGAGCCTATGGGAGGAGCATCACTTCATTCTTTCACAGAGTGCAGTTAAACGTTTACAGCGCGCAGAGAGACCCTCGTCTACAGGAGGTCGAGCGGCCGAGGGGGTCCTCTCTTTGTCCTCCACGTGTTGTATTGTGGTCTCACTGCTGGATGGAGGGAAGTGTGGGAGGGCTCTGAGGAACAAAGAGTTTGTGAGTTCTGGTCATCTCGGTTCGTTCTGCCCGGCCTCAGCCAATGGTAGCCCATGGCAATTGCCCTGCTGCTTTATTGCCACAAATTGGCCTCATTACATTGGTGGATGCAAGCCACTTACTTATCTTAGCCTCCTCCCCTGTCTCCACATACAAATCATGAAAATGTGGCATCTAAAAAGATCCAGCAATTAACAAAACACCCGCTAATGGAGAATATAATACGCTTGTGAGTTTCTCAGAATTGGAACTGTGGCAAAAGGGCTTTTTTATAACCATcgtttcaaaaataaattaaagaatatatagattatatatatatatgaatatatatttgtgctgATATTTTTGTGGCAGAGTGTTCGTTTTGTaggtttatttgtcattttggaATTCACAGACCGAATAAAACCAAATCATTTGACTTCAGAGTCAAAAACAGTCATGGGCATctcaactggaaaaaaataaatagtactCAACCGTATTCAAAATGCACAACATACAtagatgcatacatacataaatatatagccTAATGTTCATTTGGCTGTTGAAGTGAATGGCTTATTTGCTTCCTCCTCGTTCTCCTGTTGCCAATGCCGAAGGCATGACTTTATTCCACCACACTGCTGTTCCTGAGGAAAATCACAAAATCTATTTTCTGGGTCTGGAATTTTTCACGTGATTTGACATTGCTttcttgtctttatttttttaattgcccttAATGTGTTATTATCTATTATCTATGTGGattgtagaatatatattttataatgagatgtatttctgaatatatacaGAGTTGTACAGTAACACATTGTATTTGGGGGAGGGGAATTGCACTACAAATAAATGCAACTTAAAGACGA

Function

GO: NA

KEGG:

id description
K23538 ELMOD; ELMO domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83061 lncRNA downstream 103845 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 153283 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 318855 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 387468 35702763 ~ 35703073 (-) True G66284
TU82880 lncRNA downstream 393572 35694968 ~ 35696969 (-) False AMCG00020876
TU83143 lncRNA upstream 134879 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 177257 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 646622 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 750177 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 768524 36869417 ~ 36870155 (-) True G66536
AMCG00020898 mRNA downstream 24468 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020899 mRNA downstream 79802 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020897 mRNA downstream 90009 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020900 mRNA downstream 103829 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020888 mRNA downstream 210453 35864134 ~ 35880088 (-) True AMCG00020888
AMCG00020906 mRNA upstream 13736 36114629 ~ 36117694 (-) True AMCG00020906
AMCG00020905 mRNA upstream 27469 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020903 mRNA upstream 74456 36175349 ~ 36178261 (-) True AMCG00020903
AMCG00020912 mRNA upstream 145690 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020911 mRNA upstream 160100 36260993 ~ 36282529 (-) False AMCG00020911
TU83060 other downstream 103845 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 270711 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 405986 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 920362 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 939554 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 964270 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1530907 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2949323 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5499508 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile