RNA id: AMCG00020906


Basic Information

Item Value
RNA id AMCG00020906
length 855
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00020906
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36114629 ~ 36117694 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCCTGCGACTTTCAAACTGTGCGCCGGGATCTCCTACAGACATGTGAGGAACATGACCGGGTTGAGGAAGACCGCCGTAGTTGCAATTAACCAGGAACTGAAGAAAATATCTGGACCTGGGCCCAGCGCCTGGATCAGTCAAGTTCGCAGACGCAGCTCCTTGCTAAGCAGCAGGATCGAGGAGAAGCCCTACAGTGAGGTGGACCTGTCCTACATCAAACAGGGGGAGGAAGCCCTGCAGAAGGCCATCAGCATCCTCAGCAACCAAGAGGGCTGGAAGACAGAGATAGTGGCAGCGAACGGGGATAAGGTGCTGAGCAAGGTGCTCCCGGATGTTGGCAAGGTGTTTAAACTGGAGGTGGTGATGGACCAAGCACCTGACAGCCTGTACGGAGAGCTGGTGGGGAACATGGAGCAGATGGGCGAGTGGAACCCCAGTGTCAAAAAAGTCAAGATCCTGCAGAAGATAGGCCAGGACACCATGGTGACGCACGAGGTCGCCGCAGAGACTCCCGGAAACATCGTGGGCCCTCGGGACTTTGTGAGTGTGCGCTGTGCCAAGCGCAGGGGCTCCACCTGCTTCCTGGCTGGGATGTCAACCCACTACCCTGGGATGCCCGAGCAGAAAGGCGTGGTCAGGGCTGAGAATGGGCCAACGTGCATCGTTCTGAGGCCCAATGCAGAGGACCccagaaaaacaaagtttaccTGGCTTCTCAGCATAGATTTGAAAGGTTGGCTGCCCAAGAGCATCATCAATCAAGTGCTTTCCCAGACGCAGGTGGATTTCGCCCAGTGCCTGAGAGCACGAATGGCATCCAACCAGATGAGTCCATCTCTGGCCTGCTGA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0030301 cholesterol transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0015485 cholesterol binding molecular_function

KEGG:

id description
K16931 STAR; steroidogenic acute regulatory protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83061 lncRNA downstream 127933 35975764 ~ 35986696 (-) True AMCG00020900
TU83045 lncRNA downstream 177371 35926538 ~ 35937258 (-) True G66416
TU82933 lncRNA downstream 342943 35771484 ~ 35771686 (-) True G66327
TU82885 lncRNA downstream 411556 35702763 ~ 35703073 (-) True G66284
TU82880 lncRNA downstream 417660 35694968 ~ 35696969 (-) False AMCG00020876
TU83143 lncRNA upstream 118078 36235772 ~ 36236927 (-) True G66499
TU83158 lncRNA upstream 160456 36278150 ~ 36282527 (-) True AMCG00020911
TU83176 lncRNA upstream 629821 36747515 ~ 36747743 (-) True G66527
TU83184 lncRNA upstream 733376 36851070 ~ 36851636 (-) True G66535
TU83185 lncRNA upstream 751723 36869417 ~ 36870155 (-) True G66536
AMCG00020904 mRNA downstream 13736 36090541 ~ 36100893 (-) True AMCG00020904
AMCG00020898 mRNA downstream 48556 36041859 ~ 36066073 (-) True AMCG00020898
AMCG00020899 mRNA downstream 103890 36005964 ~ 36010739 (-) True AMCG00020899
AMCG00020897 mRNA downstream 114097 35992397 ~ 36000532 (-) True AMCG00020897
AMCG00020900 mRNA downstream 127917 35977474 ~ 35986712 (-) False AMCG00020900
AMCG00020905 mRNA upstream 10668 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020903 mRNA upstream 57655 36175349 ~ 36178261 (-) True AMCG00020903
AMCG00020912 mRNA upstream 128889 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020911 mRNA upstream 143299 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020913 mRNA upstream 167188 36284882 ~ 36326829 (-) True AMCG00020913
TU83060 other downstream 127933 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 294799 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 430074 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 944450 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 922753 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 947469 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 1514106 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2932522 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 5482707 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile