RNA id: AMCG00020908


Basic Information

Item Value
RNA id AMCG00020908
length 2349
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00020908
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36196447 ~ 36203860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCTTTCACCCTCAAGTTCACCCTTGACTACGACATAAACTTCCTCCTCGCCTTTAAACCCCTCCTCCATTCACCACCGGTCTAATAAACACTGTGTTGTCTTCGGCTATGAGCATTGCACTGGGTATAGCTTTAACAACAGCATCGTggcagagaaacacaaagtgcGACAAAATGACGACTTGCTATAATCTGCTGCTTCTCCTGATGCTCTCCTGGGTCTGTGACGTCACCCTGGCGGCGCATCTCCCAAAAGGGCACAACAGCAGACCTATAATCGGCATTTTGACACAGGAAGTCGTTGATGATGTCATGAAGCCCTTCGGGAAGACGTACATACCTGCGGCGTATGTGAAGTTCATCGAGTCTTCTGGGAGCATGGTGATACCTGTGAGatTGAATCAGACACTTGCTGAATATGAAAAGATCTTCAAGTCAATAAACGGACTGCTGTTTATTGGTGGTGCGGCTGATTTGGAGACCTCGGATTTTGCCAGAGATGCAGGCATTTTTTACAAACTTGCTCTGAAGGCCAATGATGTTGGGGACCACTTCCCAGTGTGGGGGACCTGTATGGGGTTTCAACTGCTCACGGTGCTGGTCGCTGAAGAGAATCTGCTGACCAAGACCACAGCAGAAAACCTGGCCTTTCCTCTCAACCTCACAGCAGCTGCCAGGTCAAGCCGAATGTTCAACAGTTTCCCACCTGACCTCCAGAAGGCATTGTCACGGGAACCGCTGACGGGAAATTTCCATCACTACGGCATCGCGGCAGAGACAttcaaaggaaatgaaaaattgGAACGATTCTTCTCCGTCCTGTCCACAAACGTGGCTGAAAATGGCGTGGAGTTTGTTTCCACGATGGAAGGCAGGAAGTATCCATTTTATGGAGTCCAGTGGCATCCGGAAATAAACCAGTTTGAGTGGGATCGCAGTATGACCATCCCCCACTCTGAGAACGCAGTCCGTGTGTCATCTCTACTGGGACAGTTTTTTATCAATGAAGCAAGGAAAAGTTCCCATCGCTTCGCCACGCCCAAGGAAGAGGAGGCCGCCCTGATCTACAATTACACCCCCATGTACACAGGCAACTTCACCGGCTACGAACAGGTCTACTTCTTCTGAGAAGCCCGAACGCACGACTACACTGCCCTCACCGCTTCACTGCCTCAGGTTGCCCGGCCCGCAGACAGACACGAAACGGTCGAAAAACGCAACCAAAACAAGACTCTTGCCTCGGATCGTCCTCATGAATTGCTTCTCAAACAAGAGCGAGAAATCACACGAAAGGCCTCCACACTTGCAACCTTGCTCTCACATTGCACATTCACACACCAGTATTTCAATGACTTGACtgaataattcacatttttaagcaGTCAGACAGTATTCCTGAGTCTATACATTGCTCGGGCTCATGGAGAACTTGGACTGTTCTGCTTTGGGGTGTCTTGGTTTActtatcaaatgttttttctctagAGACTACAGAGAACGGATCGTTAAAGCTAGAAATACTGCAATTAGTTGCATAAGTTCCTGTAATAACAGCTGTGTTATCTactaactttttttaaaaaaagtgtaacaAATGTGAGACAGATAGTAATTTTGTTCCCAAAGATGCCTGTGTGTAAATATACTGCAGCTGTTAATGGGTTTGGGTAGGGATGTGATCCAATGACAGGGAGATGGTTATTCTTGTTGTTCAGAATCTCTCAGGAAATGCATTTTGGTGCATTTTTCTTGTGTACTGTCCTTGTAAATGGCTTTAGGACAGTAACAACTGATActgataaaatgcattttttatatagtaataatatacaccacaaaaaaaaaaaaaacggactCATCACAGTGTAGAAAAAGTGGTACGCTGACTTTAAATGTCCTGACTTCATATGCATTTGGTATTGTGGAAGTTCGTATGAATTCATGTTATCGATTAgttgtgatgaaaagtgcagGATTCCAGGAAAAGAAGGggaacttaaaaaatatatgaatgtgtcAGAACTGAgtcatttaaaagtttgtgCTTTTTTCAAAAAAGTATAGAGATATGTGCTTTAGTGAATGCAGTATATATTGGTCGTTTTAAACCACCACTACTATTACTTTTGCTGCtacaaataatcataataataatataatttatggaTGTATCCAATTGTCTTAATATTGTATATAGAAACTGTAAAGTTTGACAGAAGACGTGACCCAGCATTTAAGTTAGTCTGAagcactaattaattaattggacaGCTGGGGAGGGACAGAGTGGCGTCCAGGGCAGTGGCCGGCCTCTTTGACACAACAATACACCATTGTTATTAGAGAA

Function

GO:

id name namespace
GO:0006541 glutamine metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K01307 GGH; gamma-glutamyl hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83019 lncRNA upstream 122026 36004619 ~ 36074421 (+) True G66395
TU82953 lncRNA upstream 339419 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 378668 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 427876 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 435415 35758108 ~ 35761032 (+) True G66319
TU83173 lncRNA downstream 521034 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 602460 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 869819 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1084654 37288514 ~ 37288841 (+) True G66696
TU83368 lncRNA downstream 1097388 37301248 ~ 37301598 (+) True G66700
AMCG00020907 mRNA upstream 1604 36187749 ~ 36194843 (+) True AMCG00020907
AMCG00020901 mRNA upstream 12429 36178925 ~ 36184018 (+) True AMCG00020901
AMCG00020902 mRNA upstream 82121 36101597 ~ 36114326 (+) True AMCG00020902
AMCG00020894 mRNA upstream 152469 36034871 ~ 36043978 (+) True AMCG00020894
AMCG00020896 mRNA upstream 163145 36030333 ~ 36033302 (+) True AMCG00020896
AMCG00020910 mRNA downstream 1470 36205330 ~ 36226349 (+) True AMCG00020910
AMCG00020909 mRNA downstream 31073 36234933 ~ 36241220 (+) True AMCG00020909
AMCG00020914 mRNA downstream 647635 36851495 ~ 36869578 (+) True AMCG00020914
AMCG00020919 mRNA downstream 843782 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020925 mRNA downstream 890426 37094286 ~ 37112090 (+) True AMCG00020925
TU82978 other upstream 288045 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 446093 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 1031462 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 1188125 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1408973 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 50839 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 710955 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4117253 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 4847612 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5394363 41598223 ~ 41602113 (+) True G67323

Expression Profile