RNA id: AMCG00020909


Basic Information

Item Value
RNA id AMCG00020909
length 2621
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00020909
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36234933 ~ 36241220 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGgactttagtttgttttgcttttcctctttgattataaacatgtatatacaacaataatgataacaacaaaagtgtgcattattaaaaataccattgaaataaaacatacacacgaAGGACAGATCTTCCCAAACTGTATGAAACACTGGTTTATAACTTTCCCCAAAGCAGATATCTGACTAAATCTAAAGGTATCATTTACAATGGTGACTGGTATTGATGCATGAGAGATTTAACAACTATAGTGTGTGTGAATTGTAATGgttttaataaaagtaataaataaagtgcCTTGATCTGGTATGCTTACATAGCACTGTTGTGTAGAACTACTTGTATGTTTGTTGGCTCTAGTGCTTTTATCTGTTGGAGAACATGTTGTCCTCCACAGATATCCTCCAtagataattatattattattattattattattattagtgtcaGACACCAAAATAGCTTTCATTTCATACTGTACACTCGTCCCTAATGTCCGAGACAGCAAACAGCCAATGAAACTCTCCCAGAAGGCCATGGTACTGAATATATTAGCTCGGTGCCGCAAGATCTTACCAGTTCAAACATTTCCCATGCATAACCTACATTTTCcaggaataaaacacacaatcccTGTTGAGAAGCCGCAGTTTCTGTCTATGTCTGAAATCGCACTAATACCCATGAATTGACACCGTCGCTTGGACAGCACACACTACAAATAGCCAGCTGTGCGATGGCGTGTGTGCGCTGATCCTTCTGGTTCAAGCAAGTGATGATTGGGTGCATCACGTGTGATGCGTGAGATGTGTCGCCCAGCCCTCTTGTTACGCTCGACACATGACCCGTCTGATCTTGAGCCGCTTGTGGACACAGGGAAGGAACTGGGTCGATCCTGGTTTCTGTTTAATCGTGTTAATTTAGATTTCACATTTACTTTGTAAGATTCGGATTCTATCGAATTCCGTGTTCTATGTCGTTGCTATGGCTCAAGTAATCACATTAATCCTGTTAGACTGAGCAGACAgctatttgtgttgtttatttcattctgttttaaatataagGTAATATATGCCCATGTTTAACGTGGGTGCGCATGAATTGTACTAATACAGGCGCAATGGAGGCTGATAAAAACGGATAGGACGCATGTTGCAATAACCAGTGATTTGGATGGCATAAGGGCTTGCTTGGCAGCTAATAATGACGGAAGCTGTGCAAGAATACATTAAATCCATTTATATTAGGCATAATTTGGTCTagattgcatgtttaaaaaaaaaaaaaaaagggttagTCTTCTAATGCATTTCATGCTTTTATCCCATAGCTGCTATATTTGAGGGTGTTGCTGatatcatgtttaaaaatgatagaaatatgaataaaatgacTTAAtgaaacaatgcaatacaaaagcCAACTGCcgaacagaaagaaaggcaggtATTTATGATAAGAAAGTGCGTCTGTCTTGCAAATCCTATTCTCGTTCAGGACGTCAGTAGCCACCTTTTTTACGCCGAACTCTCGCGAGACTTCTCGAGGCCGTGGGAAGACCCTTCCCAGCATGGCCGCTTCCTGATTTCACGTGTGCCACATCCAGGCCGGAGAGCACGTTTCACACATTTACACTTTACTGACTATATACAGGCTTTTTAAAAACGCGGCGAGTGTCGTTTCAAAAAGAGAGGCAAAATGCAGCACGACGACGTAATTTGGGACATCATTGGGAACAAGCAGTTCTGCTCCTACAAAGTCAAAACAAAGAATCAGAATTTTTGCCGGAATGAATACAACATCACTGGTGTTTGTAACCGGTCCTCATGCCCGCTGTCAAACAGTCAGTATGCTACGATCAGAGAAGAGAAAGGCCAGTGTTTCCTGTACATGAAGGTGATCGAGAGAGCGGCTTTCCCCGCCAGAATGTGGGAGAAGGTAAAACTGAGCAAAAACTACGAGAAAGCTCTAGAACAGATTGACGAAAACCTCATCTACTGGCCTCGCTTCCTCAGACACAAGTGTAAGCAGCGCTTCACCAAGATCACCCAGTACCTCATCCGAATCCGCAAGCTCACCCTCAAACGGCAgAGGAAACTTGTTCCTCTCAGTAGAAAAgtagagaggagagaaaaaagaagagaGGAGAAAGCCCTGGTGGCTGCTCAGCTGGAGAACGCCATCGAGAAGGAGCTGCTGGAAAGACTGAAACAGGGAACGTATGGAGACATCTACAATTTCCCAGTCCACGCGTTTGACAAAGCTCTGGAGGGACAGGATGCCGAGAGTGAGACGGATTCctcagagggagaggaggaggtggacgACGAGGATGTTGGAAAGCGAGAGTTTGTGGCAGACGACGAGGTAGAAGAGAGTGACCTGAGTGACTTTGAGGCCAGCAgtgatgaggaggaggaagaggaggaatcAAGTGCGGAGGAAGAGTCCGAGCTAGAatccgaggaggaggaggagatggagacgGAGGGGGCGGCCTCTGCTAGGAAGAAGTCAAAGGGCAAGATGCCTCTGAAAGGACCTTTCAGGAGGAAGAGAGCCTACGTGGAGATCGAGTACGAGCAAGAAACGGAGCCCGTGGCCAAGGAGAAAGCCACATAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14831 MAK16; protein MAK16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83019 lncRNA upstream 160512 36004619 ~ 36074421 (+) True G66395
TU82953 lncRNA upstream 377905 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA upstream 417154 35813743 ~ 35817779 (+) True G66348
TU82931 lncRNA upstream 466362 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 473901 35758108 ~ 35761032 (+) True G66319
TU83173 lncRNA downstream 483674 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 565100 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 832459 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1047294 37288514 ~ 37288841 (+) True G66696
TU83368 lncRNA downstream 1060028 37301248 ~ 37301598 (+) True G66700
AMCG00020910 mRNA upstream 8584 36205330 ~ 36226349 (+) True AMCG00020910
AMCG00020908 mRNA upstream 31073 36196447 ~ 36203860 (+) True AMCG00020908
AMCG00020907 mRNA upstream 40090 36187749 ~ 36194843 (+) True AMCG00020907
AMCG00020901 mRNA upstream 50915 36178925 ~ 36184018 (+) True AMCG00020901
AMCG00020902 mRNA upstream 120607 36101597 ~ 36114326 (+) True AMCG00020902
AMCG00020914 mRNA downstream 610275 36851495 ~ 36869578 (+) True AMCG00020914
AMCG00020919 mRNA downstream 806422 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020925 mRNA downstream 853066 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020926 mRNA downstream 917432 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020930 mRNA downstream 942444 37183664 ~ 37185928 (+) True AMCG00020930
TU82978 other upstream 326531 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 484579 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 1069948 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 1226611 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1447459 34784212 ~ 34787474 (+) True G66008
TU83151 other downstream 13479 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 673595 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4079893 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 4810252 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 5357003 41598223 ~ 41602113 (+) True G67323

Expression Profile