RNA id: AMCG00020915


Basic Information

Item Value
RNA id AMCG00020915
length 663
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00020915
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36872334 ~ 36874433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCCCGTGTCGCTGAATTACATCCTGATCTGCGGGCAGGTGCTGTTTCTGCTCacggtgctgctgctgcagtgtcTGGGCGGCATCCATTCCCAGAACGCGTCCGGCGCCGGCGGGACCCGGGGGGCGTCGGACCACGGCAACGGCTCGGTCATCTCCCTGCCGGCGGATCCCGGGAACGGGTCTCAGGACAACTACGAGTACAAGGATCCCTTCTCGCCACTGGTGCTCTGCAGCTTCCTTCCTGAAGAGTTCATATACTGTCAGGAGCCGGTGGATCACACTGGGAATCAGTCGGCCAAGGACGAGATGCATCATGGGTGTGTGAAGTTTGGCGGCCAGGCGTACAAAGATGTGGAGCACACAAAAGTCATCTGCACAGCCCTGACAGGCATTGAATGTGCCGGACCCCGGGAGTTCCTGAGAGGCAACGAGCCCTGCATCAAGTACACAGGGCACTACTTCATTACCACCCTGTTGTATTCTTTTTTCCTGGGCTGTTTTGGGGTGGATCGCTTTTGCCTCGGGCACACGGGCACTGCGGTGGGCAAGCTGCTAACGCTGGGCGGCCTGGGGATCTGGTGGTTCGTGGACCTCATCTTGCTGATCACGGGGGGACTGATGCCAAGCGATGGCAGCAACTGGTGCACTTTCTATTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83185 lncRNA downstream 2179 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 20698 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 124591 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 589807 36278150 ~ 36282527 (-) True AMCG00020911
TU83143 lncRNA downstream 635407 36235772 ~ 36236927 (-) True G66499
TU83275 lncRNA upstream 139548 37013981 ~ 37019796 (-) True G66613
TU83352 lncRNA upstream 393349 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 620690 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 862330 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 1025034 37899467 ~ 37899878 (-) True G66817
AMCG00020913 mRNA downstream 545505 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020911 mRNA downstream 589805 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020912 mRNA downstream 615824 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020903 mRNA downstream 694073 36175349 ~ 36178261 (-) True AMCG00020903
AMCG00020905 mRNA downstream 729241 36128362 ~ 36143093 (-) True AMCG00020905
AMCG00020917 mRNA upstream 3042 36877475 ~ 36894127 (-) True AMCG00020917
AMCG00020918 mRNA upstream 34726 36909159 ~ 36913434 (-) True AMCG00020918
AMCG00020916 mRNA upstream 40054 36914487 ~ 36931628 (-) True AMCG00020916
AMCG00020924 mRNA upstream 99976 36974409 ~ 36998756 (-) True AMCG00020924
AMCG00020921 mRNA upstream 125992 37000425 ~ 37012235 (-) True AMCG00020921
TU83060 other downstream 885638 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1052504 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1187779 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1702155 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 166014 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 190730 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 757367 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2175783 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4725968 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile