RNA id: AMCG00020916


Basic Information

Item Value
RNA id AMCG00020916
length 4985
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00020916
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36914487 ~ 36931628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACActgccttttcttctttttccttcatttcttcCTGCAGCATTGCTGGAGGTTGACGAACAGCTGATTTCAAAAACCGCTGAGCATACGAACACTTACTTGGATAAAAATTCCAACCAGAATGAGATCATCACCCTGGCCTCCAAGATCCCCGCTGCTGACGAGTCTACCCCCGCCGGAAAGGAGATCATAGATGAGCTAAATAATGTCACTGTTGTGGCAAAAAATCTAGCAGATCTTCAAATCTCTGAGGACATACGGCAGCATAACCTTAAAGTGGATTCCAAGCTGACCCGCCCGCATTCGGTGACTGCTGACTCTGATATGTTGGATGAGCCAATGGTGGTCTCCACTGAGGAATCCAACAATGACCGGGGTGAGGAAACCAGCTTGGATCCTCAGGTCAAAGCCAAGAAGACCCGGCCTCCATCGCTTGACATGAAGGGAGTGCTGGACTTACCGGACCCGGCTGAAGTTGAAGATGAGATCCCCGTTCCCAAAGCGACCAACAACTTCAACCCTGAGGACTACGATAGCAGTTCCAAACTGCAGAACTCCAGCGACGAGGCTCCAGTAGAACCTGTCAAGGCCGTGAAGATGGAGTTCGGGTTGACGGACAATGGTGAAAATGGGGAGGTGAAGAAACCACCGCCCCGAAAACTGGGCAAAAAGGGCAGCCGGCTTACCCCCAAAAAGCAAAAGCCCAAACCAACAGAGACTGGCACAGACCCTGCTCCTGAAGCTCAGAACTTGGACGACATGCCCATCCCCACATCCTCCTATACCTTTGACCCCAGCAAGTGGGACGATCCCAATTTCAATCCGTTCAGCGGCAGTGCCAACATGGGCAGCTCACCTGTCCTGCCTAAAGGATCCTACAAGTTTGACCCAGACAGCTTTGATGACACTGTAGACCCTTTTAAACCCTCCAAGGGGTTGCCTATTGACCTATCCAAGGACACTCATGGAGCTGATAAACTCATAGAGGACATGGAGACCCAGAACCTTGATCTCCCTCTAGAGGCGGAGGAGAAAGGGAGACAGTCGCCAAAGAAGAACAAATCCAGATTAATAACggGTGCATGCAAGGTGAAAAAGTATGAAAACCAATCCCTGGTTTTGGATATCTGTGGTCAGGAGGATGAGCCCGTGGTGTCGGAAGTCCCCGATATCGCCAACCGTGTGGGTCACGCCACTGACGAGGAAAAATGGGCATCCACCGCTTCCACCCAGAAGCCAGGCAAGCCCGAGATGAAGGGCGACCAGGACGACGAGTTCTTTGAGTGCTCCAACGTGCCAAACTCCACCGTCTCAAAGAAACCGACCAGCGACGGGCCTGCAATAGGACTTACTGACAATCTGGAAAACAAAGATTCCTGCTCTGCTTATGATGACCCAGCGATCACCAAAAGCACAAAGGTGACAGGAAGTGAAGGCCAAGGTACAGGAAGTCCTGTTCTAGACACTATCTGCATCAGTGAGGCAGACAAAGCAGCCGTTCTGACCCTAATTCGAgaagagATCATTACTAAAGAAATTGAAGCAAACGAATGGAAGAGGAAATACGACGAAAGCAGACAGGAAGTCATCGAAATGAGGAAAATTGTGGCTGAGTACGAGAAGACTATTGCGCAGATGATAGAGGACGAGCAGAGGACCAACATGACTTCCCAGAAGACCATGCAGCAGCTCACCCTGGAGAAAGACCAAGCGCTGGCAGACCTGAACTCGGTGGAGCGCTCTCTATCCGATCTCTTCCGGAGGTACGAGAATATGAAGGGGGTCCTGGAAGGATTCAAGAAGAATGAAGAGATGTTGAAAAAGTGCGCCCAGGAGTATCTGGCCAGAGTGAAGCAGGAGGAGCAACGCTACCAGACCCTCAAGATCCACGCTGAGGAAAAACTAGATAAGGCCAATGAAGAAATCGCTCAGGTGCGCTCCAAAGCCAACTCCGAGAGCGTGGCTCTTCACGCTGGGCTGCGGAAGGAGCAGATGAAAGTGGAGTCCTTGGAGAGAGCCTTGCAGCAGAAGAATCAAGAAATCGAGGAGCTCACCAAGATCTGCGACGAGCTGATCGCCAAACTGGGCAAAACGGACTAAACCTCCAGGACGGCCCGCCCCCAAGGCCCAAACTCCTTAACCCCTCCATCCCCGCCACCCTTCCCACCAACCCCTTCTTCAACACTGTGCATGTGCCAGCTAACAGCACCTAGCCTTACCTAGTGACCAGCCACGCCCAGTAGAATGAGATCTGCCCCTCTTTGCTGGCTAAATTAGGCATTGCATTCAAAAAGGAAAGGGATCACACCCTCGCTGCAGATTGCTCGTATATAAAGTCCATCATCTGGCCTGCACACCCTGCGCTCTCTCACTCAGCCACAGTCGTTGGAAAGAAGACtggaaagaaggagaaaaaaaataataaatccactaaaaacatcattttcttttcccaaGTAGCCTCCCCTTCCTTGTGGCCGTCATGCATTCAGTGCAGCAGGGGGAATTGCTGGAAATATGTACGATACGAGTGCAAAATGTGGCAGGACTATGTTGCCATCTGCGTGCTTGTGCCACGCCATCGTTGGTATGCACACCATActttctttctgttgtttttagttgttaTGGTGTCGCCGTCAGCTGACATACCAGGCAAGATTGGGATTGGCTTTTCCAGAGATTAGAGAGGCTGGGAATGAATCAAACCTGACCTATACTGGGAAGTGGATCCCCTCCCTTCCCTTCTTTCCCCACAGCACGGTGAAAGCCTGACCCTAAATGTTTACGCAACCAAATTGCTGCTACCATTTCAgtgaggagaggagaaaaagaaaatgaaaagtgaccaattatttttttgagCCTGTCGTCTGCAGGTTTGAAGTGTACATACAAGCACATAGAAGgatttgctttaatttctgttttgttttcttggccCTTGTGGACCAAGCGCTTTGGCTTGGCTGTCAATGGGATTGCGGAGAGCTTTTGAAATGGGTAGAACACAATGTAAGTCTCAGTTTGTTTGCCCAGTTGCAGATTATACTTCATGGCAGCTGCTGAGCAATTACAGTGACCTCCATTGGAAGTCACAGGTTGTGCTTTTTGTTGCTCTGATGCGTTTTCTGAGAATTGCTTatggaggggaagggggggatcTGAGCTTATGTCTCCCATTGTTGTGTCGGGGCTGTTTTTGACTTAAACACACCCCCTCAAGGCAGCAAGAGATGTTGTATTAGCTGTGTGATGTAtgaaatattgtgtttgtacattGCTGCCGTTTATTTCCAGAGATGCCGCTTTGTCACTGCCATTCGCTTTGCTACAGAAACCAGTCTCAGAGACGGAGGACACTGTTTTCACCACTGAAATCAGTACATTATATGAGACGTTGTATGAGATGGCAAAAAagaattggttttgtttttgttttcgatattattttaaatttgtcgTCCGTGTGATTTCAGCAAATGCTTTCAGCCCATCCAAATGCCAGAGAAATTACTGTTCTCGCCACCAATACTGTTTTATCCATATACTCCACCAGCATTTCAATGGGTATAATTTGCTGTCACATAaactttgaaaatacatttactgcACTAGCTTTTCTGTCCACAAACCTTGGCATAAGCAAGCGACTAAAgaggaaggaagaaaaagatTAAGATTATACATTAAATTGCTGTTAATTGCTCATTATTTcatcaaatacatattgttattCGCAGGatatattgtatgttatttttcttcttctcattattGTGAGCACTTAATCTCCAAAGAACTGGTAGAACAGGTATACTTGTAAAATGAacaaagtttttaaaatattttcacgGACTCCGGGGGGGAGGGTCAGAGCAGAACAGCACCTATCGTCTTGTTGTTGGCATTGACATTtcagggagacacagagacatgtttttaactctttttttattatttaaatttttttatatgtacatTGAGTCCAAGGGTGTGTTTGCTCCTTCTTTTCCCCCGGGCTTTTAAGTTTAAAATCCTGACATAGACAGATTCACAGTGGCGTTTGGACCGGCCCCCAAAATTAGGTGCAATCCCAAACTGCCATCGTTGACCGTTCCCTGTATCAGAGAACTGAGCAGGGAGACGGTTGTGCACCACGAGGCAGTGTCTACACTGACATCACTCCAGCAATACTCCGACCATAGAAAATGGACCTTTAATGCACTCCAGTTGTCCGAGCACATCAGCCTTGCAACGCATCATTTTCGCTGTAATCGACTGCCAAAACGACATCGCTATCTTTGTGCCAAATGTACACGGTATGGTTAATCAGTCTAGAGAGCGCGTTGAAAACACAGAGAGCATACTGTTCTTTTGCTGTGACTAATCCATCCTTTTCTTCCCTCCCCGTCATTCTTGAATTGCCGCCATCTgactgtgtatgttttatacGCAAAAAAGAAACGAGAACCCttcttttttaatgtcattaatatttgtaaagtGGAAACTTACACAGATGTAATGAAATTATAATgtttactaatatatatttttgtccatATCTCATTGCCTGAATAAAAAGTATCGTAATTATTAGTCTTTCAGCATCTGTTTGTACTGTATGTAACTGTGGTTCAATAAGTGACAGAACCAGCCatggaaaagacaaaaaagcacaaaaacccTTCACACCCAGATATGTAGCAAGAAAGAAGTTAAATGATGGGGGGTGCAggtgatatataatatatctgtTATGTCCTTCAGTTATGTCACTGCAATTCATGTTACGAGATTTACATCCCTGGTTTTGCATCCACTAGGTATGAAAAGGATTTAGTTCCACTCTCTGGTTTTCTAGACTGTCGTAAAAGCCTCTTATGCTGGAGATTAATTGCTGATGACATTCACACCATGCGCGTCAGACATGGGGATTAACGATGAAGAGGGGGTGACGGGGCTTGCCCTTGTGTTAA

Function

GO: NA

KEGG:

id description
K14281 TACC1; transforming acidic coiled-coil-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83185 lncRNA downstream 44332 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 62851 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 166744 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 631960 36278150 ~ 36282527 (-) True AMCG00020911
TU83143 lncRNA downstream 677560 36235772 ~ 36236927 (-) True G66499
TU83275 lncRNA upstream 82353 37013981 ~ 37019796 (-) True G66613
TU83352 lncRNA upstream 336154 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 563495 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 805135 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 967839 37899467 ~ 37899878 (-) True G66817
AMCG00020918 mRNA downstream 1053 36909159 ~ 36913434 (-) True AMCG00020918
AMCG00020917 mRNA downstream 20360 36877475 ~ 36894127 (-) True AMCG00020917
AMCG00020915 mRNA downstream 40054 36872334 ~ 36874433 (-) True AMCG00020915
AMCG00020913 mRNA downstream 587658 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020911 mRNA downstream 631958 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020924 mRNA upstream 42781 36974409 ~ 36998756 (-) True AMCG00020924
AMCG00020921 mRNA upstream 68797 37000425 ~ 37012235 (-) True AMCG00020921
AMCG00020923 mRNA upstream 88383 37020011 ~ 37040883 (-) True AMCG00020923
AMCG00020922 mRNA upstream 129967 37061595 ~ 37067805 (-) True AMCG00020922
AMCG00020920 mRNA upstream 137887 37069515 ~ 37074577 (-) True AMCG00020920
TU83060 other downstream 927791 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1094657 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1229932 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1744308 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 108819 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 133535 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 700172 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2118588 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4668773 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile