RNA id: AMCG00020917


Basic Information

Item Value
RNA id AMCG00020917
length 1038
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00020917
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36877475 ~ 36894127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgCCTTATGTGGATCGGCAGAATCGCATCTGTGGCTTCTTGGACATTGAAGAGaatgagcacagcaacaagttTCAGAGACGCTACTTCATACTGGATACCTTGGGCAACTTCCTGCTGTGGTACATGGACAACCCACAGAACTTGCCTAAAGGTACGGAAGCAGTGGGCAGTCTTCAGCTGACATACATTTCCAAGGTCAACGAAGCAACAGTAAAGCAGAAACCAAAGACTGAATTCTGCTTCGTGATAAATGCTTTATCTAGACGCTATTTCCTTCAAGCTAACGATTCTGACGATCTGAGAGACTGGGTGGAGGCTCTGAATAAAGCCACTAAGATCACTAATGAAGACGACATGGAGATGGGGGAGGCGCACAGCCTTCTCAAGAGATTGCCCAGCAGCTCTGCAGGAATCAGGCCAGGAGTCGTCAAGTGCGGCTACTGCGTCAAACAAGGAAATGTGAGAAAAAGCTGGAAAAGGAGGTTCTTCACTCTGGACGACAACTCTGTCAGTTATTTCAAATGTGAAACGGACAAGGAGCCCCTCCGTTCGATTCCTTTGAAGGATATACAGAAAGTCCACGAATGCCTGGTCAAATCGGGAGAGCTGCTGACGAGGGATAACCTTTTCGAAATCATCACAAGCTCCCGGGTTTTCTACATACAGGACACTTCTTTCAATCGCTCCACTTCGCTGTACAGGTACCGCAACAAGAATCCGCAAGCTGCCAGCGGGCGCGGGCGGCAGGCAGGCGATGAAAAGAAGGCCCCTCTGGTCAAGTCCAGCTCCATAGCTCCTTCCTGGCAGCCCTGGACCCCAATCCCTCAATCTAGCCGCTCGGCGCCCTCAGACGTGACATCCATAGAGGAGGTCACGGGGCAGTTCAACTCCCTGCCCCCCGTGCCCACAGGGGAGACCGAGGAAGTGGACGCAATGGGCAAACGCAGGCGGCATCGCTCCCAGCCGCAGCCCGCCCTCGACAAAGCGTTCCCCTTCAACATCGATGATGAAAGTATTCGCACCACTGATGtgtag

Function

GO: NA

KEGG:

id description
K23796 PLEKHA1_2; pleckstrin homology domain-containing family A member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83185 lncRNA downstream 7320 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 25839 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 129732 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 594948 36278150 ~ 36282527 (-) True AMCG00020911
TU83143 lncRNA downstream 640548 36235772 ~ 36236927 (-) True G66499
TU83275 lncRNA upstream 119854 37013981 ~ 37019796 (-) True G66613
TU83352 lncRNA upstream 373655 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 600996 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 842636 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 1005340 37899467 ~ 37899878 (-) True G66817
AMCG00020915 mRNA downstream 3042 36872334 ~ 36874433 (-) True AMCG00020915
AMCG00020913 mRNA downstream 550646 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020911 mRNA downstream 594946 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020912 mRNA downstream 620965 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020903 mRNA downstream 699214 36175349 ~ 36178261 (-) True AMCG00020903
AMCG00020918 mRNA upstream 15032 36909159 ~ 36913434 (-) True AMCG00020918
AMCG00020916 mRNA upstream 20360 36914487 ~ 36931628 (-) True AMCG00020916
AMCG00020924 mRNA upstream 80282 36974409 ~ 36998756 (-) True AMCG00020924
AMCG00020921 mRNA upstream 106298 37000425 ~ 37012235 (-) True AMCG00020921
AMCG00020923 mRNA upstream 125884 37020011 ~ 37040883 (-) True AMCG00020923
TU83060 other downstream 890779 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1057645 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1192920 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1707296 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 146320 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 171036 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 737673 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2156089 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4706274 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile