RNA id: AMCG00020918


Basic Information

Item Value
RNA id AMCG00020918
length 270
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00020918
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36909159 ~ 36913434 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAACTTGCCTGGCTCTGTTGGTTTTTGCGGCCATCGCAGTGCAGAacacCGTCATGAAGTCCTGCTCCTACAAGTCCTTCTGCGATAAAGCGCACCAGAGCAACCCCGGGGTCAAAATGGACTGCTGTTTCTCCGATGACTGCAACAGCCCCCCCAAGGGCAGAGGAGCCAGCCACGGGGGCCACAACGCGGGGGCCACCCTCTCCTGTTGCCCCACCCTCATCCTCGGGGCTTTGCTATTGAAATTGACCGCCAGCAAGCTGTAA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83185 lncRNA downstream 39004 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 57523 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 161416 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 626632 36278150 ~ 36282527 (-) True AMCG00020911
TU83143 lncRNA downstream 672232 36235772 ~ 36236927 (-) True G66499
TU83275 lncRNA upstream 100547 37013981 ~ 37019796 (-) True G66613
TU83352 lncRNA upstream 354348 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 581689 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 823329 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 986033 37899467 ~ 37899878 (-) True G66817
AMCG00020917 mRNA downstream 15032 36877475 ~ 36894127 (-) True AMCG00020917
AMCG00020915 mRNA downstream 34726 36872334 ~ 36874433 (-) True AMCG00020915
AMCG00020913 mRNA downstream 582330 36284882 ~ 36326829 (-) True AMCG00020913
AMCG00020911 mRNA downstream 626630 36260993 ~ 36282529 (-) False AMCG00020911
AMCG00020912 mRNA downstream 652649 36246583 ~ 36256510 (-) True AMCG00020912
AMCG00020916 mRNA upstream 1053 36914487 ~ 36931628 (-) True AMCG00020916
AMCG00020924 mRNA upstream 60975 36974409 ~ 36998756 (-) True AMCG00020924
AMCG00020921 mRNA upstream 86991 37000425 ~ 37012235 (-) True AMCG00020921
AMCG00020923 mRNA upstream 106577 37020011 ~ 37040883 (-) True AMCG00020923
AMCG00020922 mRNA upstream 148161 37061595 ~ 37067805 (-) True AMCG00020922
TU83060 other downstream 922463 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1089329 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1224604 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1738980 35149568 ~ 35170179 (-) False AMCG00020853
TU83279 other upstream 127013 37040447 ~ 37045939 (-) False AMCG00020923
TU83289 other upstream 151729 37065163 ~ 37067792 (-) False AMCG00020922
TU83462 other upstream 718366 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 2136782 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4686967 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile