RNA id: AMCG00020922


Basic Information

Item Value
RNA id AMCG00020922
length 2849
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00020922
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37061595 ~ 37067805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGAGGAAGTGCGGCGACAGACAGACGGGCAGTGACAGCACAGGCTCGCTTTCTTTCATTGCCTCTCCGATTGCAGTCAAAAACACCAGCTAGGTGTCATCTGCATcaatagatttatatatttagctgAATGCTATAAGCAAAAAGTGGTGATTCTGCATATAGGTGGACTGTGCACTAGGGGAGGCTGGGACCGCCATGCCGGAGCACAACGATGTGAGCCTCACCCCCGAGCAGCGGGTGCGCGCCCTCACCAAGATGGGCAGCTCGGTGGACGTCAACGAGGATGTGCCCCCCCGCCGCTACTTCCGCTCGGGCATGGAGATGATCCGCATGGCGACCGTGTACACGGAGGAGGGCAACACGGAGCGCGCCTTCATCCTCTACAACAAATTCATCACGCTCTTCATTGAGAAGCTTCCTAAACACCGGGATTACAAAACTGCCAATATCCCTGAAAAGAAGGAAACTATCAAGaagCTGAAAGATATCGCGTTCCCTCAAGCCGAGGAGCTGAAAAAGGACCTCTTGAAGAAGTATGAGAAGGAGTACCAGGAATTCCTTGTGAGGAAGAAAGCAGAGGAGGTGGCCCTGACCAAGGAGCTGACCAGACAGAAGGAGCTGGAGGCGGAGAGACAGAGGGTGGAGGAGCAGCGGCGGCGGCAGAAAGAGCAGGAGCAATTCAGCGCCTTCGAGGAGATGATCCGGCGCcaggagctggagaaggagaggcAGCGCATTTTGCAGGAGTTCGGTGCCCCCTCCGCCCCCCCGCCCGATACCCCCCTTGTGCCAGGCATCCAACCCCCCCCGCAGCCCCCAGTTGTAACCCCCACGCCCCCCCAGAGCCCAGGGAGCACCCCCACCCACACCCTGCCCTCCGCACCACTCCCACCCCCCTCGTTTGACCGGTCCCTCAAGCCTGGCACACTGGCCACCCCTGAAAAAGATGTGATGGTGGACGGGCTCCGGCAGTTGGCCGTGCCCGCGGAGCTGTGCCACAAGTTTCTGAAGCTGGCAGAGTCTAACACCGCGCGGGCTACACACAATGCCTTCACCGTGACCCACGTGGTGGTGCCCAAGCAGAGCGGTGGGCCGGATTACTGCGACACAGAGAACGAGGAGGAGCTGTTCCTGGTCCAAGATCAATATGATCTCATCACGCTGGGCTGGATACACACACACCCCACCCAGACGGCCTTCTTGTCCAGTGTGGATCTGCATACCCACTGCTCCTATCAAATCATGCTGCCAGAGTCCATCGCCATCGTCTGTTCGCCCAAGTTCAACGAgaCGGGCTATTTCAGGCTGACCGACTATGGGATGGATGATATCTCGTCCTGCAAGCAGAAAGGCTTCCACCCCCACCCAAAGGAGCCACCCCTCTTTGCGGCTTCTGGGCACATAACGATCACCAACGGGAGTGTGAATGTGATGGACCTCAGGTGATGAGACCCACCTCTGATGAGAGTCTTCTGTACTTCAACATCTGGACTTGCTAGGCCCAAAATTGttctatttaaaaagaaagaaagaacgaaagaaaaaaacagaaaagcgaAAAGCAGGCCTCCTCAACTAAATTGATTGACTGCTCTGGCGACACAGTTCAGTTCACTTCTTCCTTTTAGTGAGCTTGTGCAGCTGTAGCCCCTTCGTGGGCCGCAGAAACGTATTCACAGTATCCGTATGAGTTGCAGTATCTGTCACCTCCACAGTTTGCCTCTCCTGGTTTGGCGTAAAGCACTTTAAGAACACCCACCCTAATCACACTGGACTGTCGAGTCTGGATTTCTCTCGGTGCAACACTTCCACATGTGGTGTGGGAGTCCTGTTGACCGGGTGTCTGCTTAGGCAACGTCACGCAAGCCTGGTTGATCTGATGTTAATGTCACTTGAGTGTGTGACTTTTTACATAAGTCTtcgaatacatttttattcccTTCCAGGACAGTGCTAAGTTTAGGTCAAGTCGTACTGTAATACAGTTTTGTATTACAGAGCTGTGATTTAACCTAGATGCATTGTAAATGATACGTTTCTTGCATGGGATGGGTTATTGTcacaaaaataagcatttttctTCAACACTAGACTTATTCTCCAGTCACGACAGTAAGCTCATTGATATTGTCCCCAGTTACGCCTGACACCCCCAACCAGAACACCTTGCAGAACGCACTGTTTTAACTCTAAAATGTTTTCTATCTTGAGTGTAAACAGACGTCCTTTTGCTTCTTCACTTCATTTCTGTTCTGTGTAATTCTGTTTCAATGTCAATGTttgatgcacattttatttgtattttttatgaacaTTACAAACTTGAACTACCTGGCCTAAGTTTTAAAATCCTTTCAGTATCGACACAGGAATCTTCCCGGGCACCAGAAATGGGTTTACACAGATGCCAAGGATTGGAAAAGAACCTCAGAAATGTATCTTCCTTACAGCAGGATAACGTGTGCACTTAGCAGAATGGTGAATGTTCAAGCATATCTTTAAATCGGCATTACACtacaacatatttatttgagtGTGTCTGGTAACGGTTTATCTTGGCTCTTCTCCCGCGCTGCTCTGTGGCTGGGATGCAAACACAGTGTCCACCTATACAGAGTTTCATAGGCGTCTGACAGAGTGAGGGCCCCAGCCACAAGCACTGCATCACAGCAGGGAGTGTTCGGACAAGGATGCATAATGCAGCTttctttgatgttattttttaaaactgacaaagtactttaacttttttttaatgattcttctataatataaatatatttaatctttatGTATCTGTCTTTTTCCAGTTTGGGCAGTTTTATTGCAATAAGGTATGAAAAAA

Function

GO: NA

KEGG:

id description
K11866 STAMBP, AMSH; STAM-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83275 lncRNA downstream 41799 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 191440 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 209959 36851070 ~ 36851636 (-) True G66535
TU83176 lncRNA downstream 313852 36747515 ~ 36747743 (-) True G66527
TU83158 lncRNA downstream 779068 36278150 ~ 36282527 (-) True AMCG00020911
TU83352 lncRNA upstream 199977 37267782 ~ 37268223 (-) True G66685
TU83423 lncRNA upstream 427318 37495123 ~ 37495370 (-) True G66740
TU83474 lncRNA upstream 668958 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 831662 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 1113232 38181037 ~ 38181274 (-) True G66851
AMCG00020923 mRNA downstream 20712 37020011 ~ 37040883 (-) True AMCG00020923
AMCG00020921 mRNA downstream 49360 37000425 ~ 37012235 (-) True AMCG00020921
AMCG00020924 mRNA downstream 62839 36974409 ~ 36998756 (-) True AMCG00020924
AMCG00020916 mRNA downstream 129967 36914487 ~ 36931628 (-) True AMCG00020916
AMCG00020918 mRNA downstream 148161 36909159 ~ 36913434 (-) True AMCG00020918
AMCG00020920 mRNA upstream 1710 37069515 ~ 37074577 (-) True AMCG00020920
AMCG00020928 mRNA upstream 47738 37115543 ~ 37122859 (-) True AMCG00020928
AMCG00020927 mRNA upstream 80689 37148494 ~ 37155287 (-) True AMCG00020927
AMCG00020929 mRNA upstream 106035 37173840 ~ 37175240 (-) True AMCG00020929
AMCG00020932 mRNA upstream 173234 37241039 ~ 37282869 (-) True AMCG00020932
TU83279 other downstream 15656 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1074899 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1241765 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1377040 35679432 ~ 35684555 (-) True G66279
TU82718 other downstream 1891416 35149568 ~ 35170179 (-) False AMCG00020853
TU83462 other upstream 563995 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 1982411 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4532596 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile