RNA id: AMCG00020939


Basic Information

Item Value
RNA id AMCG00020939
length 1203
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00020939
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37534755 ~ 37539399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttatatatatcaatatttattctagttttgtaaataatatttcaagCTGTATACAAAGAATGAGGAGGGTAACTCTCTTCGTGAATGGATCTTCCAAAAACGGCAAGGTAGTGGCAGTGTATGGTACCTTGGCTGACTTGTTGTCTGTAGCAAGTAACAAGCTGGGAATCAAAGCCTCCTGTCTCTATAATGGGAAAGGGGGGCTCATCGATGACATTGCCCTTATCAGGGATGACgatgtgttgtttgtttctgaaggaGACCCATTTGTAGACCCCCAGAATGAAATGAAGGGTTCAGACGAGCATTCTGGTGGGCACACGGACTGGCTGACGTTAAACATTGGAGGGCGCTGCTTCACAACCACACGGAGCACCCTGGTTAGCAAGGAGCCAGAGAGTATGTTGGCTCACATGTTCAGAGACAAAGACGTGTGGGGTAACAAGCAGGATGATCGGGGGGCGTACCTGATCGACCGCAGCCCAGAGTACTTCGAGCCCATCCTCAACTACCTGCGGCACGGCCAGCTCATCGTCAACAAGGGCATCAACCTGCTGGGAGTTTTGGAGGAGGCCCGCTTCTTTGGCATAGAGCAGCTTGCGGAGCAGCTGGAGGTGGTGATTAAGAAATCCCAGCCCCCGGAAGACCACTCTCCCATCTCCAGGAAGGAGTTTGTGCGATTCTTGCTGGCCACACCCACCAAGTCAGAGCTGCGCTGCCAGGGTCTGAATTTCAGTGGTGCTGACCTCTCCCGTCTCGACTTGCGCTACATCAACTTCAAGATGGCCAATCTTAGCCGCTGCAACCTCACTCACGCCAACCTCTGCTGTGCCAACCTGGAGCGGGCAGACCTCTCTGGGGCCAACCTAGATgGTGCTAACCTGCAGGGTGTCAAGATGCTATGCTCTAACGCCGAGGGGGCATCTCTGAAGGGCTGTAACTTCGAGGATCCCTCAGGCCTAAAAGCTAATCTGGAAGGTGCTAACTTAAAGGGAGTGGACATGGAGGGCAGTCAGATGACCGGCATCAACCTGCGAGTTGCCACGCTGAAGAACGCCAAGCTGAAGAACTGCAACCTGCGCGGCGCCACCCTGGCTGGCACTGATCTGGAGGAGGCTAACTTGCGAGGGTCCAACGTGAAGGGTGCCATATTTGAGGAGATGCTGACACCACTGCACATGTCCCAGAGTGTCAGATAA

Function

GO: NA

KEGG:

id description
K21919 KCTD9; BTB/POZ domain-containing protein KCTD9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83423 lncRNA downstream 39385 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 266532 37267782 ~ 37268223 (-) True G66685
TU83275 lncRNA downstream 514959 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 664600 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 683119 36851070 ~ 36851636 (-) True G66535
TU83474 lncRNA upstream 197364 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 360068 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 641638 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 738595 38277994 ~ 38278539 (-) True G66872
TU83634 lncRNA upstream 1155593 38694992 ~ 38697487 (-) True G66920
AMCG00020937 mRNA downstream 6987 37524705 ~ 37527768 (-) True AMCG00020937
AMCG00020936 mRNA downstream 79887 37398299 ~ 37454868 (-) True AMCG00020936
AMCG00020934 mRNA downstream 178585 37337911 ~ 37356170 (-) True AMCG00020934
AMCG00020935 mRNA downstream 197501 37325214 ~ 37337254 (-) True AMCG00020935
AMCG00020933 mRNA downstream 211055 37303965 ~ 37323700 (-) True AMCG00020933
AMCG00020938 mRNA upstream 6225 37545624 ~ 37549905 (-) True AMCG00020938
AMCG00020940 mRNA upstream 17181 37556580 ~ 37566120 (-) True AMCG00020940
AMCG00020943 mRNA upstream 92378 37631777 ~ 37632492 (-) False AMCG00020943
AMCG00020948 mRNA upstream 232752 37772151 ~ 37814897 (-) True AMCG00020948
AMCG00020947 mRNA upstream 276495 37815894 ~ 37821863 (-) True AMCG00020947
TU83289 other downstream 466963 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 488816 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1548059 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1714925 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1850200 35679432 ~ 35684555 (-) True G66279
TU83462 other upstream 92401 37631800 ~ 37632576 (-) True AMCG00020943
TU83728 other upstream 1510817 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 4061002 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004559 True 1621 mRNA 0.46 12 NC_007121.7 42542517 ~ 42555822 (+)
grasscarp (Ctenopharyngodon idella) CI01000158_00885015_00891759.mRNA True 2094 mRNA 0.46 11 CI01000158 885015 ~ 892239 (+)