RNA id: TU83445


Basic Information

Item Value
RNA id TU83445
length 1621
lncRNA type sense_over
GC content 0.41
exon number 4
gene id AMCG00020942
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37567036 ~ 37575856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTTGTGTGTACATCATCCATTGTAAGTAgcaacaaacaaagaaacaataaagaaacaataaagaaataaacacatacagatataatgaaagaaagaagggaGAAATGCAGATAAGGACAAAATGACACAAGTATTGGTAAAATACAGGGGACAGCAGTTATAAAGAGAGGAGGAGATCCTTTGTTGGACTCTGATTGGCTAAATCTGGCAGTAATCTCTGTCCCAAAACACAGATGTGTTTAATCTCAAGGGTCAACAACACAGGGGGCTCTCTAGCAGTGCATAAATTGTCTGCACAGATTCAGTGCTCCAACACATCTCTCAGATACGAAGAACAGAAATCATGAAGTCCCTGCCTGTGGCCTTTCTCCTGTGTGCCGTGCTGCATCTCAGCCACTCTTCCTGTTACTTTAAGCAACTTGAGCTAAAACCAGGTCCGAACCCCAAGCTCCTGACCCACTGTGAAGATTCAGTGGACAAGACTCTCCATGAGCTTGGCTCACGCTGGCGCAACTCTGTCTATACAGCACACCTGTACGGATCCCAGACGACTGCATGATGGAGTTTGACAAGGTCAACTGTGAATACAAGGTGTTTAAGAAGAATGATCACTCTCAGTCATGCCCTGTTTTAGCTGCTGTGGGGAAGTAAGGGACTCCAGGATTGTTCCTGGCGAATGACTCTTCAGTGTGAACACTGACAATAAAGTTTAAGCCTAATGCTAACCATGACCATCTTGTCTGCCCAAGAATAATTATCAATGTTTTCCTAGTAGGAAGTAAATAGTGTTACATGCAACACATGTGTTCCTgtagatcagtggttcccagTCCTGGTCCCGGGGACCCAGTGTCCTACTGGTTATTGATCCACCCTCAATGAACTAAAACATttattgaactaatcatttacTTAcctaatatacttttaaatgcaaCCTAACCTCACCGATGGTTTGAAATTCTTAATGAGCTCTGATTAGGCCAAgtattagttcagttaaggaaATGAAATACCAAAAACTAGCAGGACATTGGTACCGCTGCTGGAGGTCATGACTGAATCAACAGGACGTGATTCCACAGGAACTTGAGTGACTTTAGTCCGTTATTGTGTCTCATTCTTTTTCATTCCACCTAATTAAATGAATACTTGACATGGCTGATCTAAAAAACTACTGTTTTGAGTCACATGATGTTCACATGAGAATTAAAGTAAcccataaaaacatacatttactcATACATAAAAGACCCACACAGCCACACTTTACTGATCGTAGGTCTAATGTTAAATTAGGTACTATGTTCAAACAAGTCAGACGCAATAATGGACTGTCCGCTTTGAAAAGAGATGTCTCTGCTAGTGCTTGGCAATGGACAACTACACAAGTCTACACTGCAAGCCTGAGCCCTGCAGCTGTGGACAGCAACGGCAGGAGAAGAAGCTATTTTGGACGCTGACTCAGCAGTCTTGGAAGAATCTGATTTTTCAGTAAGAAACACCCAAGCCACTCCAATCAAGAATAATTACGCAATCACCACACATTATACtcccatattattattattattacaatatactgTTATAACAAAGAGCAATATTGTCTTCAAGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83422 lncRNA upstream 75988 37495121 ~ 37495381 (+) True G66739
TU83369 lncRNA upstream 262034 37304049 ~ 37309335 (+) True G66701
TU83368 lncRNA upstream 269771 37301248 ~ 37301598 (+) True G66700
TU83364 lncRNA upstream 282528 37288514 ~ 37288841 (+) True G66696
TU83253 lncRNA upstream 496735 37073679 ~ 37074634 (+) True G66602
TU83465 lncRNA downstream 74619 37650429 ~ 37650698 (+) True G66780
TU83471 lncRNA downstream 161922 37737732 ~ 37739188 (+) True G66784
TU83489 lncRNA downstream 261292 37837102 ~ 37862332 (+) True G66801
TU83521 lncRNA downstream 398993 37974803 ~ 38065665 (+) True G66826
TU83538 lncRNA downstream 545969 38121779 ~ 38123587 (+) False AMCG00020954
AMCG00020931 mRNA upstream 344500 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020930 mRNA upstream 385441 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020926 mRNA upstream 406067 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020925 mRNA upstream 459279 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020919 mRNA upstream 513333 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020941 mRNA downstream 53514 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020945 mRNA downstream 94152 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020944 mRNA downstream 137189 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020946 mRNA downstream 330461 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020951 mRNA downstream 454918 38030728 ~ 38031966 (+) True AMCG00020951
TU83200 other upstream 653933 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1314858 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1662967 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1821015 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2406384 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2745303 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3475662 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 4022413 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4477120 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4850301 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile