RNA id: TU83462


Basic Information

Item Value
RNA id TU83462
length 631
RNA type TUCP
GC content 0.56
exon number 2
gene id AMCG00020943
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37631777 ~ 37632576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTGATGGTCAATATttaacaagtaaacaaaaaaactaaaaccccCTACAACAGGCACGGAGAGAAGTCAGGGCACGAAGGCCATGGCCATCAGCCCCAACCGACGCTACCTGGCCGTGTCTGAGACGGGGGACAAGGGCACCATCACCGTGTATGACCTAAAACACGAGCAGCACCAGAAAAAGAAGGTCCTGAGTGCCGGGGACTTCCCAACGCAGGAGTTCGTCTCCCTGGCCTTCTCCCCGGACTCTAAGTACCTTATCGGCCAGTCGGGGGCCCCAGACTGGACCCTCTACTACTGGATGTGGGAGAAGCACAAGGTGATGGCCTCGGTGAAGACCAGCATCACGACCAGTCCTGTCTATCAGGTTAGCTTTAACCCTCAGAACAACACGCAGATCTGTGTCAGTGGCAGGGGGGTGTTCAAGCTGTTCCACTACGCAGAGGGAGCCTTCAAACAGTCCAACAGCCAGAAGCTGGATGTGGGCAACGTCCTGTCCCACACCTGGCTGTCACACAAGCAAGTCATCCTCGGCACGGAGACCGGGAGGCTCCTGATGATGGAGGGTGGAGATCTGCGCTGCGAGATGAGCGTGGCTCCGAAGCCCACCACCAGAGACAGCCACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83423 lncRNA downstream 136430 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 363577 37267782 ~ 37268223 (-) True G66685
TU83275 lncRNA downstream 612004 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 761645 36869417 ~ 36870155 (-) True G66536
TU83184 lncRNA downstream 780164 36851070 ~ 36851636 (-) True G66535
TU83474 lncRNA upstream 104187 37736763 ~ 37739197 (-) True G66786
TU83511 lncRNA upstream 266891 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 548461 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 645418 38277994 ~ 38278539 (-) True G66872
TU83634 lncRNA upstream 1062416 38694992 ~ 38697487 (-) True G66920
AMCG00020940 mRNA downstream 65680 37556580 ~ 37566120 (-) True AMCG00020940
AMCG00020938 mRNA downstream 81895 37545624 ~ 37549905 (-) True AMCG00020938
AMCG00020939 mRNA downstream 92401 37534755 ~ 37539399 (-) True AMCG00020939
AMCG00020937 mRNA downstream 104032 37524705 ~ 37527768 (-) True AMCG00020937
AMCG00020936 mRNA downstream 176932 37398299 ~ 37454868 (-) True AMCG00020936
AMCG00020948 mRNA upstream 139575 37772151 ~ 37814897 (-) True AMCG00020948
AMCG00020947 mRNA upstream 183318 37815894 ~ 37821863 (-) True AMCG00020947
AMCG00020949 mRNA upstream 210324 37842900 ~ 37892340 (-) True AMCG00020949
AMCG00020953 mRNA upstream 335596 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020952 mRNA upstream 462526 38095102 ~ 38095590 (-) True AMCG00020952
TU83289 other downstream 564008 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 585861 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1645104 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1811970 35813969 ~ 35819830 (-) True AMCG00020887
TU82875 other downstream 1947245 35679432 ~ 35684555 (-) True G66279
TU83728 other upstream 1417640 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3967825 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile