RNA id: AMCG00020945



Basic Information


Item Value
RNA id AMCG00020945
length 577
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00020945
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37669962 ~ 37685496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCAGGAAGTGTACAGCACCATTggaatgaaatatatttctttgtgGAACATCTGGCTCACAAGTTCATAAGCCCCCAGCTGCGGATGTCATTCATCGTGTTCTCCACAGAAGGCAGGATTCTGATGAGGTTGACTGAAGACAGAAAGTGCTGCCAGGCGAGCGAACAGATTTACTATGGGAATACTGAAGGGTACCGGACCGCCAGTGTGATCATCGCACTCACAGACGGAGAGCTGCACGAAAACTTGTTCTTctatgcagagagagagGCCAATCGCTCAAGGAGTCTAGGAGCATCAGTGTACTGCGTGGGGGTGAAAGACTTTAATGAAACACAGCTGGCTAAGATTGCAGACAGCAAGGACCATGTCTTCCCCGTCAATGATGGATTTGAAGCCTTGCAAGGTGTGATTGACTCGATCTTGAAGAAGTCTTGCATTGAGATCCTTGCTGCTGAGCCTTCCAGTATCTGTGCAGGAGAGTCCTTCCAGGTTGTGGTCAGAGGCAATGGCTTCCTTCATGCCCGCAATGTAGAAAAAGTGCTCTGCAGCTTCCGAATCAATGACACAGTCACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83465 lncRNA upstream 19264 37650429 ~ 37650698 (+) True G66780
TU83445 lncRNA upstream 94152 37571369 ~ 37575810 (+) False AMCG00020942
TU83422 lncRNA upstream 174581 37495121 ~ 37495381 (+) True G66739
TU83369 lncRNA upstream 360627 37304049 ~ 37309335 (+) True G66701
TU83368 lncRNA upstream 368364 37301248 ~ 37301598 (+) True G66700
TU83471 lncRNA downstream 52236 37737732 ~ 37739188 (+) True G66784
TU83489 lncRNA downstream 151606 37837102 ~ 37862332 (+) True G66801
TU83521 lncRNA downstream 289307 37974803 ~ 38065665 (+) True G66826
TU83538 lncRNA downstream 436283 38121779 ~ 38123587 (+) False AMCG00020954
TU83564 lncRNA downstream 555194 38240690 ~ 38244475 (+) True G66861
AMCG00020941 mRNA upstream 39868 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020942 mRNA upstream 94106 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020931 mRNA upstream 443093 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020930 mRNA upstream 484034 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020926 mRNA upstream 504660 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020944 mRNA downstream 27503 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020946 mRNA downstream 220775 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020951 mRNA downstream 345232 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020950 mRNA downstream 420516 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020954 mRNA downstream 431566 38117062 ~ 38137073 (+) True AMCG00020954
TU83200 other upstream 752526 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1413451 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1761560 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1919608 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2504977 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2635617 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3365976 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3912727 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4367434 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4740615 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile