RNA id: AMCG00020947


Basic Information

Item Value
RNA id AMCG00020947
length 2014
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00020947
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37815894 ~ 37821863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGGTGCCACTCACAAAAATGGCGTCGGGAAGGTGGTTTGGACGTATACTGCAATGTTCAGCTTTGCTGCCCACTTCGCTCCCGCGGGTCTCTGTGAGGGCCTGTCAGTATGCAGGGCTGCACTGGGTCGCACAAAGCACACAGAGGGCAGTACTGACTCCACGGCCCACAACAAACATTGCAGTGAGAAGTATGTTCATTCAGACACAGGACACCCCCAACCCCAACAGCATGAAGTTCCTGCCTGGTTGCATGGTGCTGGAATCGGGAACCATGGACTTTGCTGGGCCCAGAGATGCCCACTGCTCCCCTCTGGCCAGGCAGCTCTTCAGAATAGATGGAGTGAAGAGCGTCTTTCTGGGGCCAGACTTCATCACCATAACCAAGGGCCATGGGGATATGGAATGGAAGGTGATTAAGCCTGATGTCTATGCTGCCATCATGGACTTCTTCAGCTCTGGGTTGCCAGTGTTGAATGAGAACACCCCCCAAGCTGACACAGcaccCTCGGAGGATGATGATGAGGTTGTCTCCATGATCAAGGAGCTCCTGGACTCTCGCATCCGGCCCACAGTCCAGGAGGATGGGGGTGACGTGTTGTTCCGTGGCTTCGAGGATGGGATAGTGAAGCTCAAACTCCAGGGCTCCTGCACCAGCTGCCCCAGCTCCATCATCACCCTGCGCAGCGGCATCCAAAACATGTTGCAGTTCTATGTCCCAGAAGTGGAGGGGGTGGAGCAGGTGAAGGATGAGGAGGACAATGTGGAGCAGGGGGCCCAGTCCTAAGAGCTTGCCAGCCCCAGTCCAAGGCGTGCTCTTTTCCTCCTCATTGAACCAGCAGCACTCTTGAAAGGTCCAGATTTCTTCAAGAAAACATCAACGGGTGTCACAGTGCACCAAAAAGGGTCCAGACTTGGCACCCACATCCCCAGCTCTGTGCAATGTGTACTGTTGGTGAGACGACATGGGAGTTAAGACCACAGAAGTCAGTTTCAGAATTCGgcatagttgttttttttaagctttataCTGGGAATTGATCATCTGACATTTTTCTTGAACTGTTGAGACTGTGTTAGGTAACTACAGAATACAAATTTGGAAATGGCAGATGGATCTGATTGGAGAACAAACAGCCAACAGCCCTATCTGTATAACACTCCCTCTCTACTCTCCTGAAAAACCAGTTTTCCCACCCACTTCCTTGTCCCATATCCGGGCTGCTCCAGATAACTCGGGAACTATTACGCACAACATACTTATTACTGGCATTCTCATCTTTATGCCCTTCTGTGTTTCCTGCAGTCATGTTAAGatatttaatgtagtatattgTATGGATTACGAAAAACACTGTCTGATCCTTTGCAACAGATCAATAGGCCAGTGTATGTGCTTAATGTAGGATGTGATGACACATAAAATCTTTCCTGACTAATGACTAAAAAggatcaatatttaatttttagatACATTATTATGGAGTATGCTGTGCTTTTCTAAACTGCTGATTCCAAAGTAGGTTTTCTTTTGGAGCTTAGGGTGAAAATTTTGTAGGATCACCCTTTAATAaccctttaaattatttaatatgagCCTACATCTTAAAACTGTATTGATATTACGGAGTTTTGAAATATAACAGCAtttagaaaaagtaaaaatggtATGCGTCATCTTGTAAATTTTTTCCAAGGTAGGGGGTAAGATCCATCGCAGAAGTGCTCTTTGGCAATATTCTAGATAATAAGTGCCAATGAATTTGTTAGTTTAATCtcttaatatatttgtaaagaccagttattgtttttgcttcttCTAGAACACAGTGATCCAGACTGTACTAAGCATCTctacaaaacacacaagtgaAGTATTTCACACTGCAGAAACTCTCAAAATTGTGCTTAGAAAGGTGTACAGATATGTCCAttgaaaagtaataaaaaaaaaaaaaaatggtgtgggtataattgaataatttcagTTTTGAGCTGCAAATGTAGCcctcgg

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22074 NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83474 lncRNA downstream 76697 37736763 ~ 37739197 (-) True G66786
TU83423 lncRNA downstream 320524 37495123 ~ 37495370 (-) True G66740
TU83352 lncRNA downstream 547671 37267782 ~ 37268223 (-) True G66685
TU83275 lncRNA downstream 796098 37013981 ~ 37019796 (-) True G66613
TU83185 lncRNA downstream 945739 36869417 ~ 36870155 (-) True G66536
TU83511 lncRNA upstream 77604 37899467 ~ 37899878 (-) True G66817
TU83550 lncRNA upstream 359174 38181037 ~ 38181274 (-) True G66851
TU83575 lncRNA upstream 456131 38277994 ~ 38278539 (-) True G66872
TU83634 lncRNA upstream 873129 38694992 ~ 38697487 (-) True G66920
TU83640 lncRNA upstream 885409 38707272 ~ 38732240 (-) True G66926
AMCG00020948 mRNA downstream 997 37772151 ~ 37814897 (-) True AMCG00020948
AMCG00020943 mRNA downstream 183402 37631777 ~ 37632492 (-) False AMCG00020943
AMCG00020940 mRNA downstream 249774 37556580 ~ 37566120 (-) True AMCG00020940
AMCG00020938 mRNA downstream 265989 37545624 ~ 37549905 (-) True AMCG00020938
AMCG00020939 mRNA downstream 276495 37534755 ~ 37539399 (-) True AMCG00020939
AMCG00020949 mRNA upstream 21037 37842900 ~ 37892340 (-) True AMCG00020949
AMCG00020953 mRNA upstream 146309 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020952 mRNA upstream 273239 38095102 ~ 38095590 (-) True AMCG00020952
AMCG00020958 mRNA upstream 410803 38232666 ~ 38238994 (-) True AMCG00020958
AMCG00020957 mRNA upstream 419883 38241746 ~ 38260001 (-) True AMCG00020957
TU83462 other downstream 183318 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 748102 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 769955 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 1829198 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 1996064 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 1228353 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3778538 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile