RNA id: TU83538



Basic Information


Item Value
RNA id TU83538
length 939
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00020954
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38117062 ~ 38137073 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGCAAAGAGGAAGTAGTAGTCTGTGCAGggcaatatatacaaacaggaagcagatAGAGATGTATGATGTGCAGAAAGGgctataggcagctttgatagtcaGATGTTTCGTATAAGGCAGCAGGAATTCAGACTGTGGGTGGGACTGGAGCAGTTCGTCTGGGTGCGGAGCTCTTAAAACGCTGTTACAATGTGGGTGTGGCCTGGTGTGGGCCAGTCTATCTCTCCTCTCCCTGTGACGACTCCCTGGCCAGAACATTTCAGGCGGTGGGGATCAGAGATGTCCACCACTACCGCTACTGGGATGCAGAGAAGAAGAGTGTGGCTGTCGAGTGGCTGCTGGAGGACCTGGAGGCAGTTCCAGAGCAGGCGGTCATTGTGCTCTCCGCCTCAGGACACTGCCCCACTGGGGCTGACCCCAGTCAAGAGCAGTGGGCCTCTATTGCTCAGGTCATGATGGTGAGCACTGAATCAGTATCTGAAGCTGACTCTGGGCAGAAACGTCTGGATAAAATGCTGAGAGTGATTTGTTACTAGAGGGGCaacattttgttcttattttgacAACACACCTCAACAAAATGGAGAATTATGTTGGGAATCAGATGGGATTCTAAAAATAGTGAAAGGATGAAATGTTTTCACTTCTCTTAACTGATTTCATTCCTTTTGAAACACAACTACTGGTGAACCTGAAAAACAGGATGATAGCATGCAACTTCAAACTTTTGAACGAATACTGAGTGCcatagtgttatttttaaaggaggTGTGTATTTGTGGCTCTTGTAGGCCCCCCACCACCCCTGTATAAAGCCTACAACTGCGGGGTCCTCCAGGTAGTCCACTGCAGAGatgtaacatgttttttatatatataaaacggGTTGCCACACTGTTAGCTCACTCCACAAAGGACAATAAACATCACTCTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83521 lncRNA upstream 56114 37974803 ~ 38065665 (+) True G66826
TU83489 lncRNA upstream 259447 37837102 ~ 37862332 (+) True G66801
TU83471 lncRNA upstream 382591 37737732 ~ 37739188 (+) True G66784
TU83465 lncRNA upstream 471081 37650429 ~ 37650698 (+) True G66780
TU83445 lncRNA upstream 545969 37571369 ~ 37575810 (+) False AMCG00020942
TU83564 lncRNA downstream 117103 38240690 ~ 38244475 (+) True G66861
TU83568 lncRNA downstream 152403 38275990 ~ 38276294 (+) True G66865
TU83593 lncRNA downstream 301125 38424712 ~ 38425252 (+) True G66887
TU83691 lncRNA downstream 886992 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 925834 39049421 ~ 39049631 (+) True G66995
AMCG00020950 mRNA upstream 9880 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020951 mRNA upstream 89813 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020946 mRNA upstream 199325 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020944 mRNA upstream 404699 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020945 mRNA upstream 436283 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020955 mRNA downstream 102659 38226246 ~ 38228104 (+) True AMCG00020955
AMCG00020956 mRNA downstream 135931 38259518 ~ 38275155 (+) True AMCG00020956
AMCG00020962 mRNA downstream 368125 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020963 mRNA downstream 564576 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020964 mRNA downstream 633148 38756735 ~ 38772815 (+) True AMCG00020964
TU83200 other upstream 1204343 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1865268 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2213377 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2371425 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2956794 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2197526 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2927885 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3474636 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3929343 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4302524 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile