RNA id: AMCG00020961


Basic Information

Item Value
RNA id AMCG00020961
length 1161
RNA type mRNA
GC content 0.60
exon number 9
gene id AMCG00020961
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38366127 ~ 38410862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTGAACGCGGGGAGCAAGGCAGAGCATGCCGGCCTTGGACTTGGTGATATCATCCAGGAAATCAATGGTGAGAGCACAGCCGACATGCTTAATGTGGAAGCCCAGAACAAGATCAAGAACTCCAAGACAAAGCTACAGCTGGCAGTGGACAGAAACAACACTCTGGTCCCTTCTCCGGACAATGGCTCAGTGTGGCCGCCACTGCCTCGCTCCCAATTAAAGCCCTCGTATGCTTTGGCCTTCCAACAGGCTGGGCACCCAGCCAATGCACAAAAAGCGGAGGAAACGGTCCTGGCAGCAACGAGGCCGGACCCTCCTTCCCCAAGACAGACGAATGGCATCAGCACTCCGGAGCAGCTAACCGGCCGCTTCCAGGAGGTATTGCAGTCCAGCCGAGATGAGAATCAGAACTACAATGACTACTCATTCTCCAGCCCAGCCTCTCTGTCGCCGGCCCCCTACTCCCCAGAGCCCCTCAGCCCAGACCGGAAGAGAGATGTGTACAGCCCCACCAGCACCAAGAGCTTACGGGTGCGGCCGTGGTCGCCAGTGGAGAAGCCGTTGGTCTCTAGAGTGTCCACAAGGCCACTGTCACAGGAGATTGTCCAAGATGTTCGGAGGAACTCTGTGTCCCGGACACCCACCCCGCCCGGCCGCTACTCCCCTCACAGTCCTGTGGACCGGGAGCTCCCCATCTCTCCCCACTGCAGCTCAGAAGTGGCCATGCAGAAGTTTGACCGCGACTCAGAGGTCTACAAGATGATCCAGGAGAACAAAGAGTCCCGCGCCGCGCCGCGCCAGTCCAACACCTTCCGCATGCTGCAGGAGGTCCTGGAGGCTGATGAGAAAGAGGCTGCAGTGCGGTTTCCAGGGAATTTGGCCCCTATCCAACCCAAGCCAGTGTCCTCGGTGGCCGGGGTCCAGAAGTACCACACTTGTGAGAAGTGCGGCACCAGCATTGTCACACAGGCCGTCCGCATCGTGGAGGACCGGTACCGGCACCCGGAGTGCTACACCTGCACTCAGTGCGGCCTCAACCTGAAGATGCGCGGCCACTTCTGGTTCGGTGACGATATGTTCTGTGAGAAGCACGCGAGGGAGAAGTACCATGGATCCCCAGGGGCCCAGCCCACCACCGTCTCCCCCCGCCACTAG

Function

GO: NA

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83575 lncRNA downstream 87588 38277994 ~ 38278539 (-) True G66872
TU83550 lncRNA downstream 184853 38181037 ~ 38181274 (-) True G66851
TU83511 lncRNA downstream 466249 37899467 ~ 37899878 (-) True G66817
TU83474 lncRNA downstream 626930 37736763 ~ 37739197 (-) True G66786
TU83423 lncRNA downstream 870757 37495123 ~ 37495370 (-) True G66740
TU83634 lncRNA upstream 284130 38694992 ~ 38697487 (-) True G66920
TU83640 lncRNA upstream 296410 38707272 ~ 38732240 (-) True G66926
TU83642 lncRNA upstream 313429 38724291 ~ 38772808 (-) False G66927
TU83641 lncRNA upstream 360758 38771620 ~ 38772808 (-) True G66927
TU83715 lncRNA upstream 626298 39037160 ~ 39038645 (-) True G66994
AMCG00020959 mRNA downstream 65708 38278635 ~ 38300419 (-) True AMCG00020959
AMCG00020957 mRNA downstream 106126 38241746 ~ 38260001 (-) True AMCG00020957
AMCG00020958 mRNA downstream 127133 38232666 ~ 38238994 (-) True AMCG00020958
AMCG00020952 mRNA downstream 270537 38095102 ~ 38095590 (-) True AMCG00020952
AMCG00020953 mRNA downstream 335155 37968172 ~ 38030972 (-) True AMCG00020953
AMCG00020960 mRNA upstream 17018 38427880 ~ 38458638 (-) True AMCG00020960
AMCG00020971 mRNA upstream 594568 39005430 ~ 39009794 (-) True AMCG00020971
AMCG00020970 mRNA upstream 636842 39047704 ~ 39080843 (-) True AMCG00020970
AMCG00020974 mRNA upstream 683635 39094497 ~ 39096651 (-) True AMCG00020974
AMCG00020975 mRNA upstream 706573 39117435 ~ 39529985 (-) True AMCG00020975
TU83462 other downstream 733551 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 1298335 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 1320188 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 2379431 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 2546297 35813969 ~ 35819830 (-) True AMCG00020887
TU83728 other upstream 639354 39050216 ~ 39104867 (-) False AMCG00020970
TU84154 other upstream 3189539 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile