RNA id: AMCG00020966



Basic Information


Item Value
RNA id AMCG00020966
length 729
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00020966
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38898945 ~ 38901605 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCATTCTCAAAGCCATCCTGGCCATCGCCCTCATCTGGATGCTGGCCTGTGCGATCATGTGTCCCTCAGCCGCCATGTTAACAGTCATTCATCTGAAGGACACCTACATGATCCAGGACAACAAGACGTACCCACTCCTCACCTGCTTTGAAAACTGGCCTCAGCCGGAGATGCGGAAGCTCTACACCACCGTCCTGTTTGTACACGTCTACCTTGCACCCCTGGGGCTCATCAGCCTCATGTACTGCAGGATCGCCATGAAGCTCTTCAGCAACCTGGGGCCCGTGGGACGGGGCTCAGGGGAAGCACAGGTAGAGAGGACCTCTGTCTCCAAGAAGAAGGTGAAAGTCATCAAGATGCTGATTACTGTGGCTGTCCTCTTCATGGTCTCCTGGCTTCCCCTGTGGACCCTGATGCTCCTCACAGACTACGGGGACCTGAACGATGAACAGATCGACCTCCTCGGTGGCTACATCTTCCCCTTCGCCCACTGGCTGGCTTTCTTCAATAGCGGAGTCAACCCCATCATCTACGGATACTTCAACGAGAATTTCAAAAGGGGCTTTCAGGCAGCCCTCCCCTTCTGCTCCTTTGAAGTGACCCACCAGCAGGTTTACTCCCAAAGGACTCCCAGGGCTGGCAGGTTTTTCCTACACAACAAGGTCTCCAATGATGAATCCTTGGAAGCTACTCATGTCCTGAAACCAACCAATGCACAGGAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83593 lncRNA upstream 473693 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 622651 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 654470 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 775358 38121779 ~ 38123587 (+) False AMCG00020954
TU83521 lncRNA upstream 833280 37974803 ~ 38065665 (+) True G66826
TU83691 lncRNA downstream 108974 39010579 ~ 39010849 (+) True G66970
TU83716 lncRNA downstream 147816 39049421 ~ 39049631 (+) True G66995
TU83754 lncRNA downstream 403692 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 847552 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 1662597 40564202 ~ 40570215 (+) True AMCG00020993
AMCG00020967 mRNA upstream 13838 38880596 ~ 38885107 (+) True AMCG00020967
AMCG00020965 mRNA upstream 86691 38784879 ~ 38812254 (+) True AMCG00020965
AMCG00020964 mRNA upstream 126130 38756735 ~ 38772815 (+) True AMCG00020964
AMCG00020963 mRNA upstream 204440 38688163 ~ 38694505 (+) True AMCG00020963
AMCG00020962 mRNA upstream 382603 38491712 ~ 38516342 (+) True AMCG00020962
AMCG00020968 mRNA downstream 51880 38953485 ~ 38972284 (+) True AMCG00020968
AMCG00020969 mRNA downstream 83272 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020972 mRNA downstream 111106 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020973 mRNA downstream 145655 39047260 ~ 39061811 (+) True AMCG00020973
AMCG00020978 mRNA downstream 713849 39615454 ~ 39617163 (+) True AMCG00020978
TU83200 other upstream 1981509 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2642434 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 2990543 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 3148591 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3733960 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1419508 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 2149867 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 2696618 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 3151325 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 3524506 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile