RNA id: AMCG00020970



Basic Information


Item Value
RNA id AMCG00020970
length 810
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00020970
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39047704 ~ 39104867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCACCAACAAAGTGGGCCAAGTATGGCAAAAAGTACAACGAAGACTGGGAACAGGAACAAGAACTTAAAGACTGGATAGGTCAAGTGGTCGGTGATCTTGGGGCCCTGGATGCACATTATCAGGGAATCCACTTCGAGGAGTGGAAAACAAAGGATGACTGTCAAGCAGAACAGTTCTGGGTAGAAGTTCTGAACTTCGAGGACAGCAGTGGGGAGCTGTGGTTTAAAGATCTGGCCCTGTCTCTTCTTGCAATGCCCCTTAGCAATGCCAACGTTGAAAGGCGGTTTCACAAAGTCACGTTCAAACTTGCGGCGATCTTTCTTGATCTCAAGCAGACGAATATCTGCAGCTTCTATGATGGCCTGACAATTTCAAATACCTCGCTGGCCAAGTGCAGAACACAGAAACTGGTAGCAGCAGAAGCCATCCAGAGCCCGAACTCCAAAGCATCCTtagaaggaggagagagagtgcagaTCAGTACATTTCAGATGCCTCTTGTGAGGAGGAGATGTTGGAGGGGACCAGTCAGCACACACTGGAATTGCCAGCAGAGGGGATCTCTATCAAGAGGAGTCCTGGGAAAGGAAACCTCAACCTTCTATGCCAGCAGCCAGATACGGAACAGGAACAGACAGGCAGGGTACCTGTGGCTGTCTCTGGTGCTGGGCTTCGGAGCCACACTCATCTCGCAGCACAGATCTCTACCCTCCATCATCAGGAGCCTCCCGGTCTCCGTGCCAACGATGACTTGCTTGTCTGACAGCCAGGCGTGGAACAGGACGTTGTGGGCTCCCTCTGCGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83715 lncRNA downstream 9059 39037160 ~ 39038645 (-) True G66994
TU83642 lncRNA downstream 274896 38724291 ~ 38772808 (-) False G66927
TU83641 lncRNA downstream 274896 38771620 ~ 38772808 (-) True G66927
TU83640 lncRNA downstream 315464 38707272 ~ 38732240 (-) True G66926
TU83634 lncRNA downstream 350217 38694992 ~ 38697487 (-) True G66920
TU83752 lncRNA upstream 218043 39298886 ~ 39299232 (-) True G67025
TU83759 lncRNA upstream 414992 39495835 ~ 39527599 (-) True G67032
TU83792 lncRNA upstream 744027 39824870 ~ 39929271 (-) True G67056
TU83795 lncRNA upstream 814576 39895419 ~ 39968822 (-) False G67058
TU83797 lncRNA upstream 814576 39895419 ~ 40005458 (-) True G67058
AMCG00020971 mRNA downstream 37910 39005430 ~ 39009794 (-) True AMCG00020971
AMCG00020960 mRNA downstream 589066 38427880 ~ 38458638 (-) True AMCG00020960
AMCG00020961 mRNA downstream 636842 38366127 ~ 38410862 (-) True AMCG00020961
AMCG00020959 mRNA downstream 747285 38278635 ~ 38300419 (-) True AMCG00020959
AMCG00020957 mRNA downstream 787703 38241746 ~ 38260001 (-) True AMCG00020957
AMCG00020974 mRNA upstream 13654 39094497 ~ 39096651 (-) True AMCG00020974
AMCG00020975 mRNA upstream 36592 39117435 ~ 39529985 (-) True AMCG00020975
AMCG00020977 mRNA upstream 565906 39646749 ~ 39666597 (-) True AMCG00020977
AMCG00020979 mRNA upstream 596074 39676917 ~ 39677327 (-) True AMCG00020979
AMCG00020980 mRNA upstream 654591 39735434 ~ 39738340 (-) True AMCG00020980
TU83462 other downstream 1415128 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 1979912 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 2001765 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 3061008 35975764 ~ 35986696 (-) False AMCG00020900
TU82986 other downstream 3227874 35813969 ~ 35819830 (-) True AMCG00020887
TU84154 other upstream 2519558 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile