RNA id: AMCG00020973


Basic Information

Item Value
RNA id AMCG00020973
length 1299
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00020973
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39047260 ~ 39061811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATCAGCCCCAACCGACACTACCTGGCCGTGTTTGAGATGGGGGACAAGAGCACCATCACCGTGTATGACCTAAAACACGAGCAGCACCAGAAGAGGAAAGTCCTGAGTGCCGGGGACTTCCCAATGCAGGAGTTCGTCTCCCTGGCCTTCTCCCCAGACTCCAAGTACCTTATCGGCCAGTCGGGGGCCCCAGACTGCACCCTCTACTATGTGGGAGAAGCACAAGGTGTTGGCCTCGGTGAAGACCAGCATCACGACCAGTCTCTCAGCTTTAACCCTCAGGACAACACGCAGATCTGTGTCAGTGGCAGGGGGGTGTTCAAGCTGTTCCACTACGCAGAGGGAGCCCACAACGTCCTGTTCCACGCCTGGCTGTCAGACAAGCAAGTCATCGTTGGCACGGAGACCGGGAGGCTCCTGATGATGGAGGGTAGAGATCTGTGCTGCGAGATGAGTGTGGCTCCGAAGCCCAGCACCAGAGACAGCCACAGTCGCTTCAATGCTGCTAAGAAGGCGGAGAATGAGATGTTCGAGAGGTTTTTGAGCCGCCTTGATCCGAAGGACCTGGAGCCACTGGCCCCCACAAAGCCCTCTCTTGGTGTGTCCCAGACAGAAGTGTCTCAGCCCCCGAAGAGGCTGACTATGGACCAGAAATGTTACATAGCTCAGCTGGAGCTGGCGGAGATGGAGAAGGACATGCAGAGGTCTCGTGAGGAGTCAGAGGCAGAAATTGACCACTACAAGGCCATCATAGAAGCTGCAGATATTCGTCTGCTTGAGATCAAGAAAGATCGCCGCAAGTTTGAACGTGACTTTGTGAAACCGCTGCAGGAAAAGAAAGGAGACATGATGGTAGCGCAAAAGGTCACACATTACTTTCAGGACCGAACTCGGGCCAAGGAGACCCTTGTAGAGAGTCTGCGATTGAAAAATGCAGCCCTGAGAGAGCAGCTCAAGAAGCTCGAAATGCAGCTAAAAGAGAAACAGCTACAGAACGCTATGTGTGAATCAGACCGACTTGACAGAGAGATCTCTGCACAGAATGAAATGCTGGTGAAGCTAGACAGTGAATGCCTGCAGGCAGAAAAGGAGCGAGCCGAGGCGGAGGCTGAGAACCAGAGACTGCACAGTCAGCTCTCCGAGTACCAAGTGCCAGATACCATCCATGAGAGACATCACAACATCATGGGGCTGGCCAAATTCACTCCTCTCGGTATCATTTGCAGCTCCTGTGTGCACTTTCAATGTGTAGACATACCCGTTACTACTGTCCGCAAGCACCCACATCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83691 lncRNA upstream 36411 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 622008 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 770966 38275990 ~ 38276294 (+) True G66865
TU83564 lncRNA upstream 802785 38240690 ~ 38244475 (+) True G66861
TU83538 lncRNA upstream 923673 38121779 ~ 38123587 (+) False AMCG00020954
TU83754 lncRNA downstream 243486 39305297 ~ 39305587 (+) True G67027
TU83778 lncRNA downstream 687346 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 1502391 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 1508516 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 1511743 40573554 ~ 40574856 (+) True G67182
AMCG00020972 mRNA upstream 19733 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020969 mRNA upstream 42431 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020968 mRNA upstream 74976 38953485 ~ 38972284 (+) True AMCG00020968
AMCG00020966 mRNA upstream 145655 38898945 ~ 38901605 (+) True AMCG00020966
AMCG00020967 mRNA upstream 162153 38880596 ~ 38885107 (+) True AMCG00020967
AMCG00020978 mRNA downstream 553643 39615454 ~ 39617163 (+) True AMCG00020978
AMCG00020976 mRNA downstream 555497 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020981 mRNA downstream 739468 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020983 mRNA downstream 1149331 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020982 mRNA downstream 1168131 40229942 ~ 40269290 (+) True AMCG00020982
TU83200 other upstream 2129824 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 2790749 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 3138858 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 3296906 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 3882275 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1259302 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 1989661 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 2536412 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 2991119 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 3364300 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile