RNA id: AMCG00020977


Basic Information

Item Value
RNA id AMCG00020977
length 708
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00020977
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39646749 ~ 39666597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGGTCCCGCTCCCGGCCGCTCCCAATGCCAAACCAGAGGTCccaaagaaagggaaaagaaaaaagaaaaaggtacctGCTCCAGTCCCGGCCACGTCTGCTGCCGAATCAGAGGTCCCGACCTTGGCCGTTTCCGCCGCCgagccagaggtcccgatcccggtcccgaacccggccgccgccgccgagCCAGAGGTCCCGAAACCGGTCCCGAACCCGGCCGCCGCCCAGCCCGAGTGCCCAGCGGCTGTTTTGGATGCTGGCAAACTGGGGTCGAGACTGGCAGATTTTCACATGAATTGTCAGACGTCTTCACATTCAACTTCAATTACCAGCTGTCCCAATGACAATTACAAAGCGTGTCTAGCATCCTATGCAGGACTTATCGGATCTGACTTGACACCGAACTACGTGGATGCCAGCTACACAAACATCACCATCTCCCCCTGGTGCACGTGTCGAGGGAGTGGCAATGACGAGGAAGAGTGTGAAAACTTCCTGAGGGACTTCAGAGAGAACACCTGCCTCACCACGGTTACAGCCAAAACCAGCCGCGAGCCAGAGGTTCAGTCTGAGCCCTCAGTCAACCCCAACGATATTAAACCTAGTGACGACGCCTGTGTCTTTTCTACTTGTGCCAACCTCCAGGTAAGTTCAGCTCGACGCAAACTCAGCCTGGCAATTGTGGGCCTCTCAACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83759 lncRNA downstream 119150 39495835 ~ 39527599 (-) True G67032
TU83752 lncRNA downstream 347517 39298886 ~ 39299232 (-) True G67025
TU83733 lncRNA downstream 554553 39075710 ~ 39092196 (-) True G67010
TU83715 lncRNA downstream 608104 39037160 ~ 39038645 (-) True G66994
TU83642 lncRNA downstream 873941 38724291 ~ 38772808 (-) False G66927
TU83792 lncRNA upstream 158273 39824870 ~ 39929271 (-) True G67056
TU83795 lncRNA upstream 228822 39895419 ~ 39968822 (-) False G67058
TU83797 lncRNA upstream 228822 39895419 ~ 40005458 (-) True G67058
TU83824 lncRNA upstream 540582 40207179 ~ 40207437 (-) True G67080
TU83849 lncRNA upstream 624921 40291518 ~ 40291726 (-) True G67103
AMCG00020975 mRNA downstream 116764 39117435 ~ 39529985 (-) True AMCG00020975
AMCG00020974 mRNA downstream 550098 39094497 ~ 39096651 (-) True AMCG00020974
AMCG00020970 mRNA downstream 565906 39047704 ~ 39080843 (-) True AMCG00020970
AMCG00020971 mRNA downstream 636955 39005430 ~ 39009794 (-) True AMCG00020971
AMCG00020960 mRNA downstream 1188111 38427880 ~ 38458638 (-) True AMCG00020960
AMCG00020979 mRNA upstream 10320 39676917 ~ 39677327 (-) True AMCG00020979
AMCG00020980 mRNA upstream 68837 39735434 ~ 39738340 (-) True AMCG00020980
AMCG00020986 mRNA upstream 504833 40171430 ~ 40192036 (-) True AMCG00020986
AMCG00020985 mRNA upstream 544946 40211543 ~ 40227671 (-) True AMCG00020985
AMCG00020984 mRNA upstream 603044 40269641 ~ 40275638 (-) True AMCG00020984
TU83728 other downstream 541882 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 2014173 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 2578957 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 2600810 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 3660053 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 1933804 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile