RNA id: AMCG00020978



Basic Information


Item Value
RNA id AMCG00020978
length 918
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00020978
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39615454 ~ 39617163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGGAGGACATCGTGATGCCAAACATGGAGGATAATGAGGACAAGGAGGACgatgaagaagaggaagagggggcAATAAGACTCGGAGAGAGCGATAAAGAgagtgggggcggggggggaccTGAGGGACCGAGGCGTCCTCAGTTAAAGTCTTACCCGACTCGAAAATTTGGATCTCAATCAAGGGGGTTTAACAACTCTTGGTTCAAACAATACTCGTGGCTGGAATACTCGCTCTCAGTTGATGCTGCTTTCTGCTATGCATGTACACATTTTATCTACCATGGACTGGGTCATATTGAAAAGAGCTTCACCCATGCTGGGTTTCAAAACTGGAGAAAAGGAGCAGAGAAACTGGCCCAACACAATGCAAGTGTTTCCCATAAACTAGCCATTGAAGCATGGTGTGAATTTAAGAAGATTTTAACACATCTTGACATTGGACATTCCAAGATTGTACAAGAAAACAGGCAGTACATGCGAGCTGTAGTTGAGTCACTACGGTTTACAGCTTGTCAAATGATTGGTCAGCAAGGGCACAGAGAAAACAAGCAATCCACCAGCAGAGATGTGAGCGACCAGTCAAATGCTCATAGGGCGACCAAAGCAAAATCACTGATTGGATTAATTGATGGACAGTTTGTTCTGCACGTCACTATGCTGGAAAGCATATTCAGCCTCACAAAAACCCTATCCGATCACCTACAGGCCACAGATTTGGGGCTGGCATCTGTCACTGATCTGGTCTGTTCAGTTGTCAATACCCTCAACAAGAAACGCAATGTTGAAACATGGAATGCAATCTGGGAGTGTGCTATGGGCATTGAAATGCAGCAACCACAGGTGAGGAGAAAAGCACAGCCTCGCCACCTGCAGGAGTTTGTGGTGAACAGCCAAACAGGGTCAAGAGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83754 lncRNA upstream 309867 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 565823 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 604605 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1190202 38424712 ~ 38425252 (+) True G66887
TU83568 lncRNA upstream 1339160 38275990 ~ 38276294 (+) True G66865
TU83778 lncRNA downstream 131994 39749157 ~ 39749361 (+) True G67048
TU83931 lncRNA downstream 947039 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 953164 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 956391 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 1168598 40785761 ~ 40791471 (+) True G67207
AMCG00020973 mRNA upstream 553643 39047260 ~ 39061811 (+) True AMCG00020973
AMCG00020972 mRNA upstream 587927 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020969 mRNA upstream 610625 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020968 mRNA upstream 643170 38953485 ~ 38972284 (+) True AMCG00020968
AMCG00020966 mRNA upstream 713849 38898945 ~ 38901605 (+) True AMCG00020966
AMCG00020976 mRNA downstream 145 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020981 mRNA downstream 184116 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020983 mRNA downstream 593979 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020982 mRNA downstream 612779 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020990 mRNA downstream 660159 40277322 ~ 40284496 (+) True AMCG00020990
TU83200 other upstream 2698018 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 3358943 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 3707052 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 3865100 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 4450469 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 703950 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 1434309 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1981060 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 2435767 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2808948 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile