RNA id: AMCG00020981


Basic Information

Item Value
RNA id AMCG00020981
length 1794
RNA type mRNA
GC content 0.48
exon number 15
gene id AMCG00020981
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 39801279 ~ 40063685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCCACAATCAATCCAGAAAAGAACGGCCACCCCAGACACCAGTAGCCCCCTCTATTCTTCCGCCACGACCCAGTTCTCCATCATCCCGGGAGATCTGGGACTGataaCTTTGGATCTTGATAACTCTTTTGGTGGAAGTCAGGTGCCAGATTGGctcatTTGGTATGGTCTTCTCATTAGACTTGTCAATCATGTCTGCTTAAAAGAGACACCAGTTGATTTGACCACAGAGGAAGAATCTACCATTTATGACAGATGTGCGAAACAACTTTACAACTACAACCATCCAGAGAAGAAGGGATGGGGGCGGACGTGTTTGAACAACGCCGTGAAGCCCCAAGTAACACAACTTCTGCGGGTTCTGGGCATCTCACCCATCCTGTGCTCTCTCGGGGGGCGCTCCCCACATGAGCGTAGGCACCACTACTCCCACTCCAGCAATCACAGCCCTGGCTACTCATGCTTGTTGCCCAAGTGTAGGGCTCTTAGGGGGGCCCCCGACATTTTAGTGGTGAAGACACAACACATGTTGTCCATCCTGACCTGGATCCTGTTCTTCCCCCCTCCTTGCACTTCTGGTGCCACCACCACTGGTTACAATGCCTGTGATTATGGCACCATCTCCTCACCCTGTGGAGCCTCGCTTTGCAGAGCAGTCCTGCTTGTCGAGACGGGGTGCCTGGAAGCACTGGGTCCCCTCAATGGCATCCTGATGTGGAGTACTCGACTTACTCTTGGGGTGTCTAGGAAACTGCAAGTGGTGACTGAAGAAGAAGATGCTGTGAAGTTGgccattaaaaagaagaaggatAAAGAATCACACACCACTGCtaagtttTCTCTCCACACCAATCAGGTGAACTTAAATAACATTCTGGCAGTGGTAACTGACAATGCATCATATTGTCTTAAAGCCTACAAACATGTATTGAAGGGTCTAATGCCTAACAGTGTGCATGCAACCTGCTTGTGCCATGTCATCAATTTGGTGGGAGAGACCTGGCAACACTACAAATACTTCAGCAAGGTCACAGCTTTAGTGATGTGGGTGAAATCTGCTTTCTTCAAAAAACCTGAAAGAAAGAGGAGATGGCTGTGCTTTTTGACAATGAAGGAGACTGAAGCCCAAGATGACAAGCTAGAGGCCCTGCAGGTGAAGCTGACCTTCATCTCTGAGGGGTGTGGCAAACTAGTTACAGCTCTGAGGGTGCTTGAGGGCACCCACTCTCCCACAGCATTCTCTGCTTATAACATCATGGAGGATCTTGGTGCCTACTTAGTTAATGGAAAAGCCAAAACCCATGGCTTTGGGGTCAAAACTGATGAGCTGCTGAACCAAATGACCATGCAACAGAAGAGGGATGTACTTGATTACCTTCATGATGGATTTcacattgcatttgaaaaaaaatcaaagcactGGGATGTCCATCCTGCCAGAGAGATCTACAAGATGATCAGAGTGTTTGATCCCAGACAGGCACCTGCGATGGAAAGGTATGTTGAGGCCTATGGTACACTGTGGGTTCTGAAGAGCCCATCTCCAGAGCTCACCCTCTCAACTTCCCTGGACCTTGCTGACTACTGGAAAGGCACAAGCCAACAATTTCCAAGGGTTGCAGAAATTGCAATGTCCTACATGTATCTTCCAGTCAGTTCAGTTGACTGTGAAAGGAGCTTCAGCAAGTACAAGACACTCCTCACTGACAAGAGAGAGTCTCTTACTGAGCTCAACACCAAGCGCTCCAATACTCCATCATTTGAAGTTGTCGAACCTATTGTGGTctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 51918 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 495692 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 751648 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 790430 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1376027 38424712 ~ 38425252 (+) True G66887
TU83931 lncRNA downstream 500517 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 506642 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 509869 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 722076 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 723000 40786685 ~ 40791471 (+) False G67207
AMCG00020976 mRNA upstream 114961 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020978 mRNA upstream 184116 39615454 ~ 39617163 (+) True AMCG00020978
AMCG00020973 mRNA upstream 739468 39047260 ~ 39061811 (+) True AMCG00020973
AMCG00020972 mRNA upstream 773752 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020969 mRNA upstream 796450 38984877 ~ 39004829 (+) True AMCG00020969
AMCG00020983 mRNA downstream 147457 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020982 mRNA downstream 166257 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020990 mRNA downstream 213637 40277322 ~ 40284496 (+) True AMCG00020990
AMCG00020988 mRNA downstream 247835 40311520 ~ 40319723 (+) True AMCG00020988
AMCG00020989 mRNA downstream 305549 40369234 ~ 40386635 (+) True AMCG00020989
TU83200 other upstream 2883843 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 3544768 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 3892877 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4050925 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 4636294 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 257428 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 987787 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1534538 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1989245 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2362426 42426111 ~ 42465886 (+) True AMCG00021029