RNA id: AMCG00020983



Basic Information


Item Value
RNA id AMCG00020983
length 876
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00020983
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40211142 ~ 40229767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cttgacttgagacacaggagTGGAGGAGCAAGGCTGAAGCAGGTGACAGCAGGTGACAGCAGGTGACAGCAGGTGACAGCAGGTGACAGCAGGTGACAGCAAGTGACAGCAAGTGACACACTAGGTTCTACCCATGGCGGATGACCAGAGAAGTGAGACGCTGCAGTGGTAGTAAGGATTTTTGACTGGGAGAAGCTAAGTGAATTTATATTAGGAATTTATACCCTCATTGAGGTatagattgtgtttttttttttgttttgttggaagCTGTCACTGCCGTGGACctgctctcttcctctcttgAAGCCTCCTccactccctctcccactcctgTAGCAAAGGAAAAGTGACTTACTCGGTCTGAGACTAACTTGCATATGACCAGTGATATGTATGACCTAGACCTTTTTAGGGCCAGTGGAGTTGGGGATCCCTCGGAAGACTGACGACGAACCTGTGAGGAGAGAAACATGATTAAAGAGAGGCAGAAAAGGAAGTAGAATGGAGGAGAAACCAATTGGTGAGGAGCAAACGCCGACCGAAACAGGTTTGACCGTCGGAGCCGCACACTGCGTcctgggacacacacacacagcgcggCTCCGGGATCTCTCCGTGGCTCAGGTCCGACAGGTCAACTCTGCACTCCAGGTCGCGTCCACAGAGCCCGTAGAAGCTACTGACGGAGTCCAGGTCGCACAGTTGCCCTTCCACGTTGCCGCAATCGAAGCAACAACCGCAACTGTCCAGGACCAGTCCAGCGGCGCAGCCCTGCGCGTCCGAGCAGAGCTCCGGCGAACAGGGAGCGCACCGCGCTGCATCTCCGGCGTCCTTTTCGTCCTTGCTCTCGGGAATGGAGCCGTTTCCCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 461781 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 905555 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1161511 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 1200293 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1785890 38424712 ~ 38425252 (+) True G66887
TU83931 lncRNA downstream 334435 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 340560 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 343787 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 555994 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 556918 40786685 ~ 40791471 (+) False G67207
AMCG00020981 mRNA upstream 147457 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020976 mRNA upstream 524824 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020978 mRNA upstream 593979 39615454 ~ 39617163 (+) True AMCG00020978
AMCG00020973 mRNA upstream 1149331 39047260 ~ 39061811 (+) True AMCG00020973
AMCG00020972 mRNA upstream 1183615 39012711 ~ 39027527 (+) True AMCG00020972
AMCG00020982 mRNA downstream 175 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020990 mRNA downstream 47555 40277322 ~ 40284496 (+) True AMCG00020990
AMCG00020988 mRNA downstream 81753 40311520 ~ 40319723 (+) True AMCG00020988
AMCG00020989 mRNA downstream 139467 40369234 ~ 40386635 (+) True AMCG00020989
AMCG00020987 mRNA downstream 169169 40398936 ~ 40431760 (+) True AMCG00020987
TU83200 other upstream 3293706 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 3954631 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4302740 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4460788 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 5046157 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 91346 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 821705 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1368456 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1823163 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2196344 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile