RNA id: AMCG00020988


Basic Information

Item Value
RNA id AMCG00020988
length 1693
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00020988
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40311520 ~ 40319723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTTGTTAAGCCGCGGTTCATTAGCCCCCCTACAGTAGCCAGAAACCATCTCTGATAAAGCTGCGCTGCTTTTCCCAGGTGACACCAGTTAGTTCCCAGTTGCCCACCCACCCACTGGACCCCCCGTTTCCCTATGCAGGGGAGGGCCTCGCCGCCTCTCATTTTTCACCTTCGCTCCACAGCGAGTGACCGAGCCGCGCAGGACACGGAGAGCCTCTTTAATTTGGATCCATCTGCGGACGCGCTGACAGTACGGATCCAGAGCCGGCCGGTGGATGTGGAGCGCTTTCTATTCCCATCACTATCTAATTGCGTTCACTCGGCTTTTCCAAAATACTCGTTATTAACTGCGGGCTGGACAACTTGATTTCTATATAAGACCTAAGATAATGGCATTTCACGGCTCGCCAGGCAGCAAATGTGAATTGGAAGTGAATAATCAGCCAATCTATTTCGGCTTCGCTCTCGTATTGACATGGGATTAACATGTAGTCTCGGTCTCTGATGCTGTCACCGAAGTTTGTTCAATGCGTGGACTTGAGGAGGAAAGGAAGAAGGAAGCCTGAATTTTAATAACTGCGATTATCTATTTTGATGGATTTAGATTGATCCCGGTAACGGACGGGTGAGGGTGAAATTGGGAAATTCTCGaaaggacatttttaaagaccATTCTGCTGGATTAACACCTTTCCGAGATTTTGGAACAAACATTTGcagtttctgaaaaaaaaaacttttcttttgGATGAACCTAAAGGATCACCAACAATGCAGGCAATAAACCAACGCTCAATTTACATGTCATTTCACTTTCTAGTCTTGTGGTGTCATGCTCAGgggGAGTATCACCCGTCTCCTAATTTTAACCAGTATGTGAGGGAGCAGGGCGCTGCGACGGACCAGCTCAGCCGGAGACAGGTCCGCGTCTACCAGCTGTACAGCCGGACCAGCGGCAAACACGTCCAGATCCAGGGCAAGAAGATCAGCGCCACCGCCGAGGACGGCAACTCGTTCGCACGGCTATTTGTGGAGACGGACACTTTTGGCAGTCGAGTGAGGATTAAAGGAGCAGAGAGTGGACACTTCCTGTGCATGAACCGGAAAGGAAAGCTCATTGGAAagCCCAGCGGGAGAAGCAAGGACTGCATCTTCACTGAGATCGTGCTGGAGAACAACTACACAGCCTTCCAGAACGCCAAGTACGAGGGCTGGTACGTGGCATTCTCCAGGAAAGGCCGACCCATAAAGGCCTCAAAGACTCGGGAGAACCAGAGGGAGGTCCATTTTATCAAGAGGCTCCATAAGGGTCCGCCGCCTTTCCCTAACCTTGACCGAGAAAACACCTTTGAGTTCATCAGCTTCCCACCTACGAGACGTGCCAAACGCAACAGGAAGACGAGAACTTCCCCCTAACGCAGAGCTGTGTGTAAATAGGACTGGTctgatttttcatatttttaaaaataaaagagaaggtaaagattttatttttatattaatacttttaaatgccaacgtgttttttttcttttttatatgtaatattgTCTCTTTGTACATAAAGTAAGAGGGTAAtgaaatgaatgtatatatttaatattgctGTTTGTCTTAGCGTTTGCCTTGGAGGGATTATTGATGGTGGGGAGTGGGAGAGGAAGATGCACCAATAAAAAATCCTTATTCAA

Function

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 562159 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 1005933 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1261889 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 1300671 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1886268 38424712 ~ 38425252 (+) True G66887
TU83931 lncRNA downstream 244479 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 250604 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 253831 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 466038 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 466962 40786685 ~ 40791471 (+) False G67207
AMCG00020990 mRNA upstream 27024 40277322 ~ 40284496 (+) True AMCG00020990
AMCG00020982 mRNA upstream 42230 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020983 mRNA upstream 81753 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020981 mRNA upstream 247835 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020976 mRNA upstream 625202 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020989 mRNA downstream 49511 40369234 ~ 40386635 (+) True AMCG00020989
AMCG00020987 mRNA downstream 79213 40398936 ~ 40431760 (+) True AMCG00020987
AMCG00020994 mRNA downstream 117615 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00020995 mRNA downstream 170963 40490686 ~ 40530054 (+) True AMCG00020995
AMCG00020996 mRNA downstream 224367 40544090 ~ 40554656 (+) True AMCG00020996
TU83200 other upstream 3394084 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4055009 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4403118 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4561166 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 5146535 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 1390 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 731749 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1278500 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1733207 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2106388 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile