RNA id: AMCG00020990



Basic Information


Item Value
RNA id AMCG00020990
length 833
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00020990
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40277322 ~ 40284496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTTCTGCCCCGCCTCTTTGTAGTATTCAAAATGAGTTGGGTTGGTgatttcttgctttttttccttGAAAATTCAAAGAAAAGTCCCAATTAAAAAGATTCTTCAAAGATCATGGCTTCAGCAGCAGGCGCTAACAAACCGGAAAAACCTATTTCAACTATATGGGgTTGCGAATTGAACGACAAAAACAAGACGGCCACGTTTGCGACCGACGACTCCAAGCACCAGCACCAGCTGGCTCTGAGAACTatgtgCCTGGGTGCCGACGCGAAAGACGAGTTTAACATCGTCGAGTTAGTCCCAAACCAGGAGGAAGGACCGCACATGAAACCGGTGCCATTAGCGACGCTGAAATCCTCCATAATGCCAACGGATTACTCTTTTGACGAAGAcctggaagaggaagaggaagaggaggatggtgaagaggaggaggagattgAGGAGTCTCCACCAAAACCTAGAAAGAAGCCGGAAAAAGAGGAGGAAGAaaTGCCTACAGATGATGAGAACAGTCCGCCTAAAAAGGGAAAGGGAAGGGGAAGAAAGCCAGCAGCCAAGAAGTAGTCAACAATTTTGGAGgTGCAGTTCATGGATGGGGGAAAAACCAAGAACATTGCTCATCTAGTAAATCGCTTTTCAGTAAAGGAATTCATGCCTTTGGTGTTTTTCCTTTAGCCTGCCTGTTCAGTGAGTTTTGTTTGATTATGGTGGACAGAGCATCAGAAGGGTCTTCCACAGTGTTAAGATGTATAGTGCTGGTCAAGTCCTTTTGTGTATTGTTCTATTGCTAATAAAGCACAAAAAGTAAAGTTTTTTTGGGAATCAATA

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 527961 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 971735 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1227691 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 1266473 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 1852070 38424712 ~ 38425252 (+) True G66887
TU83931 lncRNA downstream 279706 40564202 ~ 40570215 (+) True AMCG00020993
TU83936 lncRNA downstream 285831 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 289058 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 501265 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 502189 40786685 ~ 40791471 (+) False G67207
AMCG00020982 mRNA upstream 8032 40229942 ~ 40269290 (+) True AMCG00020982
AMCG00020983 mRNA upstream 47555 40211142 ~ 40229767 (+) True AMCG00020983
AMCG00020981 mRNA upstream 213637 39801279 ~ 40063685 (+) True AMCG00020981
AMCG00020976 mRNA upstream 591004 39617308 ~ 39686318 (+) True AMCG00020976
AMCG00020978 mRNA upstream 660159 39615454 ~ 39617163 (+) True AMCG00020978
AMCG00020988 mRNA downstream 27024 40311520 ~ 40319723 (+) True AMCG00020988
AMCG00020989 mRNA downstream 84738 40369234 ~ 40386635 (+) True AMCG00020989
AMCG00020987 mRNA downstream 114440 40398936 ~ 40431760 (+) True AMCG00020987
AMCG00020994 mRNA downstream 152842 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00020995 mRNA downstream 206190 40490686 ~ 40530054 (+) True AMCG00020995
TU83200 other upstream 3359886 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4020811 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4368920 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4526968 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 5112337 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 36617 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 766976 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1313727 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1768434 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 2141615 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile