RNA id: TU83931


Basic Information

Item Value
RNA id TU83931
length 2659
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00020993
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40555966 ~ 40570215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAATCTGAAGAGGAACTGTTTATACATTCAGGGAATCTGATGATCTAGAGAGCGCATGATATCAGTTGTGTATTTGTAATCCAATGATCTAATGGgcatgttgtttgtgtttttcctctaaAGACCCAAAGGCAAAGACAAGACATCCTTAAGTTGATTCTAGCTGGAGAAAATCTCAGTAACGCGATCAACCTAAAGGAGATTGCGGAAAAGACAGAGGATTACTCTGGAAGCGACCTGAAAGAGCTGTGCAGGGACGCAGCGATGTACCGTGTGAGGGATTACGTACGTAAACAGCAGATGAAACAGATTGCCCAGCAGCTACAGGAGGGCGAAGAAGAGGAGCGGCCGGTGGATGAAGACAGACTGCGGCCTGTCACCCAACTGGACCTCCTCTTTGGGCTGGAGAAGATGAAGGAGTCTAAGACTGCCACCGTGTCCCAGTGTGTCCTGCGAGATGTGCCCCTTGACTAGCCCTGTCCCTCCTCTCCACTGTTGCTCCATGTGGGACTGTGAAAGGGAGTGAGCTCTCAGTCATGCAAGTACACTAGGAAATATTTCTAGACCTCCTGTGGGGCTGTTCTCAGATTTTAACGCCTGCTTTTTCTAAAGGAATGAAGCAGCCTTAAATTAGCCAAGGGataccaatttatttatttatttatgtatgtatgtatgtatgtatgtatgtatgtatgtatgttactGTTTTCTGTCAGTCTTTCTGTCAGCCAAGGTTACAACCAGCATTTATGAGTATTTTTCTTATACTTTCCTCCATGAAGACACttatatgtatgtctgtgtgtgtatgtgtgtctgagagagagacacttaGATGTCTATATGACTTGGGTCTTCTAGGTCCTCAGTGGTATAACAACACTCACTGGTTAGATAGGGATCGGTGGTGCATTTTTCTGCCTTTACTCCACTGAGTCAGAGTGTTGTGATGTTGCAGTGTCTTTGACTAAACATTACATATCATGGGGaggccaaacaaacaaacacacacacacgcacacttgGCTGATCTTGGCTTTGGAGGGAAATTCAAGCTGGTTGTTTTGAAAGActctagaccagtggttcccaaacaaaaggcaacatacattttcttgcatttgaaatataacAACTTGCACTCTtacggggggtgggggggtcaatACCAATACAATTGCAATACCACTATAGAACacttgacacattttaaattgttttaatatattcatgtatatatgttttttggcGGGGGGGGTGGTGAGTTCAGTTAAATGTGATCATGTACAGGATGGAATATGCACCAAACTGGCACCAAATGTGCTACTCCTACTGCACACTGGTGTTTGGGGAAAACTGCTTTAGACGAATAAATCCACCTTTCAATTGGTCataaattagaaaacaatacagattCTTAAATGGGTAAACTGTGGTAATTATAAAAAAGGCATGTAACAGCTTTGGCTGAGCCTCCTAGTCTAGTCTCTGATCAATCCACAACTTTATTGCATCTTTTAGTTGCATCTTTTTCCAATGCACCATTACAGTTGTTctacatttcaaatcaattcCAGCTCGTGGGTGCTCCTGAGTGGAAGAACCAGTATAAGCCACTGAGAAGATCACAGCAGCTTATAGTCCAGAGATCACTAGTTCAAATCTGGGCCAGGCCAGTAACCAGCTTGGTCTCCTAAAGGGAGAGTACACTGGCCAACTGCCACTGGGAGTGTGTAACGGGCTAGACCACTGTGAGCCTCTTTTCATATTCCTTAAACCTTCTGTTTTGCTGTGAGTTTGCACTATGAAAAATGAAGCCTCATCCTTAACATTTCAAAGGACGTGTGTACACTGTCTTCATCTGTCCAATGTTAGTCGAAGGGTTGTAGTAGAGAAACTAATTGAATTACAATTGCAGATTTCAATATTGGACAgggtaaaacaaacaagccaacaaTCAAAAAATTAAAGTCATAGCCAGCAGATAGGGACTAATAGTGGAGGATAAACCATGGTCTGCAGTTTCACTGCTTCAGGTGCAAGTTATagcacaaaagaaagaaaaagtgcatATAGAGCTTATATCATATCACTGGTTTCAATCTTTCCACTCTGatttactaattattattattattaataataataataatattattattttaaattaatggtgCATAATGATATGGTATTACTGCCATTATAGCCTGAagtcatatttttgtataaagcttttgtgtatataattattgttattgattttacatttcagacCTAACTAGTGTAAGTCAATATGTCAGGCCCGAAAACAGGATGTAGTCAGTCACGGGTCTGCACAATATCCAtccaaattgtacattttattttaataaaaggtgCCCCAGTGTAAACTCCGGTTCCAGCAATGAACAAATGAAGGAACAGtttagaacaaaacaacaacaaaactttttgcagttttgaatgtctgtgtgtgcatgctccCTGCATTCTGTTATTTGTCTGAAGGTCAGAGATGTGACTTTTCAGCCTTAAAAAGGTGGAGTGCCGTCAATTTTCTTTGGTCCAAAATCCTCCAATATCAACCATCAGCATTCCCAATCAAAAACTAACGTCCTTTTATAACccatatgcttttttttttttttttttNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83778 lncRNA upstream 814841 39749157 ~ 39749361 (+) True G67048
TU83754 lncRNA upstream 1258615 39305297 ~ 39305587 (+) True G67027
TU83716 lncRNA upstream 1514571 39049421 ~ 39049631 (+) True G66995
TU83691 lncRNA upstream 1553353 39010579 ~ 39010849 (+) True G66970
TU83593 lncRNA upstream 2138950 38424712 ~ 38425252 (+) True G66887
TU83936 lncRNA downstream 112 40570327 ~ 40571722 (+) True G67180
TU83938 lncRNA downstream 3339 40573554 ~ 40574856 (+) True G67182
TU83965 lncRNA downstream 215546 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA downstream 216470 40786685 ~ 40791471 (+) False G67207
TU83981 lncRNA downstream 379884 40950099 ~ 40965912 (+) True G67221
AMCG00020996 mRNA upstream 9546 40544090 ~ 40554656 (+) True AMCG00020996
AMCG00020995 mRNA upstream 34148 40490686 ~ 40530054 (+) True AMCG00020995
AMCG00020994 mRNA upstream 107430 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00020987 mRNA upstream 132442 40398936 ~ 40431760 (+) True AMCG00020987
AMCG00020989 mRNA upstream 177567 40369234 ~ 40386635 (+) True AMCG00020989
AMCG00020999 mRNA downstream 188282 40758497 ~ 40799108 (+) True AMCG00020999
AMCG00021000 mRNA downstream 252354 40822569 ~ 40838773 (+) True AMCG00021000
AMCG00021002 mRNA downstream 340220 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021001 mRNA downstream 354232 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021005 mRNA downstream 481330 41051545 ~ 41062527 (+) False AMCG00021005
TU83857 other upstream 242381 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 3646766 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4307691 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4655800 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 4813848 35747225 ~ 35750354 (+) True AMCG00020874
TU84041 other downstream 481257 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 1028008 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1482715 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1855896 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile