RNA id: AMCG00020997


Basic Information

Item Value
RNA id AMCG00020997
length 537
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00020997
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40557130 ~ 40640339 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGACAGTTTGGGGATACAATGTTCTGCCAGCAATGGTACCACACCTCGTGTCTGGGAATAAGAGAGACTTCACCACAGCAAAAGAAGATGAACAGTGGAAGGAGCCTCTTTGCCACCTTGATAGCCAAAGCCACAGCCAAGGCCTCGGGCTGTCAGTTCATCAACCTGCAGGCCTCCACGCTGACGGACAAGTGGTATGGAGAGTCGCAGAAACTCACTGCTGCAGTCTTTTCCCTGGCTGTTAAAATCCAGCCCTGCATCATCTTCATCGACGAGATTGACTCCTTTTTGCGCAATCGCTCCAGTCTGGACCATGAAGCCACAGCCATGATGAAAGCTCAGTTCATGAGTCTGTGGGATGGACTGGAGACTGGCTCAGATTCCCAGGTGATGGTGATGGGAGCCACAAACAGGCCTCAGGATGTGGACCCGGCCATACTTCGCAGGATGCCTACAACCTTCCAGATCAACCTACCTGTCATGGATGGTGTCACCTTGGGGCGGCTGGAAGAGCTTGGAGCCTGTGAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83849 lncRNA downstream 265404 40291518 ~ 40291726 (-) True G67103
TU83824 lncRNA downstream 349693 40207179 ~ 40207437 (-) True G67080
TU83797 lncRNA downstream 551672 39895419 ~ 40005458 (-) True G67058
TU83795 lncRNA downstream 588308 39895419 ~ 39968822 (-) False G67058
TU83792 lncRNA downstream 627859 39824870 ~ 39929271 (-) True G67056
TU84007 lncRNA upstream 200764 40841103 ~ 40904117 (-) True G67246
TU84013 lncRNA upstream 261051 40901390 ~ 40902331 (-) True G67252
TU84038 lncRNA upstream 398469 41038808 ~ 41039096 (-) True G67273
TU84042 lncRNA upstream 411145 41051484 ~ 41052538 (-) True G67277
TU84052 lncRNA upstream 462380 41102719 ~ 41103224 (-) True G67283
AMCG00020992 mRNA downstream 26520 40530158 ~ 40530610 (-) True AMCG00020992
AMCG00020991 mRNA downstream 98667 40454892 ~ 40458463 (-) True AMCG00020991
AMCG00020984 mRNA downstream 281492 40269641 ~ 40275638 (-) True AMCG00020984
AMCG00020985 mRNA downstream 329459 40211543 ~ 40227671 (-) True AMCG00020985
AMCG00020986 mRNA downstream 365094 40171430 ~ 40192036 (-) True AMCG00020986
AMCG00020998 mRNA upstream 21587 40661926 ~ 40729626 (-) True AMCG00020998
AMCG00021004 mRNA upstream 357468 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00021003 mRNA upstream 359841 41000180 ~ 41004194 (-) True AMCG00021003
AMCG00021006 mRNA upstream 452530 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021008 mRNA upstream 726385 41366724 ~ 41367357 (-) True AMCG00021008
TU83728 other downstream 1452263 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 2924554 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 3489338 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 3511191 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 4570434 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 960062 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile