RNA id: TU83930


Basic Information

Item Value
RNA id TU83930
length 484
lncRNA type sense_over
GC content 0.52
exon number 3
gene id AMCG00020997
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40557130 ~ 40640339 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGTCTTGCTCTATGGGCCCCCGGGCTGTGGGAAGACCTTGATAGCCAAAGCCACAGCCAAGGCCTCGGGCTGTCAGTTCATCAACCTGCAGGCCTCCACGCTGACGGACAAGTGGTATGGAGAGTCGCAGAAACTCACTGCTGCAGTCTTTTCCCTGGCTGTTAAAATCCAGCCCTGCATCATCTTCATCGACGAGATTGACTCCTTTTTGCGCAATCGCTCCAGTCTGGACCATGAAGCCACAGCCATGATGAAAGCTCAGTTCATGAGTCTGTGGGATGGACTGGAGACTGGCTCAGATTCCCAGGTGATGGTGATGGGAGCCACAAACAGGCCTCAGGATGTGGACCCGGCCATACTTCGCAGGATGCCTACAACCTTCCAGATCAACCTACCTGTAAGAATGAACTTGCATTCAGTCCCACTCCAAGCCGGCAAATGTGTtgattgttctttgttttacaCCTTCATATGTTACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83849 lncRNA downstream 267365 40291518 ~ 40291726 (-) True G67103
TU83824 lncRNA downstream 351654 40207179 ~ 40207437 (-) True G67080
TU83797 lncRNA downstream 553633 39895419 ~ 40005458 (-) True G67058
TU83795 lncRNA downstream 590269 39895419 ~ 39968822 (-) False G67058
TU83792 lncRNA downstream 629820 39824870 ~ 39929271 (-) True G67056
TU83937 lncRNA upstream 9197 40570327 ~ 40571996 (-) True G67181
TU83939 lncRNA upstream 11891 40573021 ~ 40574856 (-) True G67183
TU84007 lncRNA upstream 279973 40841103 ~ 40904117 (-) True G67246
TU84013 lncRNA upstream 340260 40901390 ~ 40902331 (-) True G67252
TU84038 lncRNA upstream 477678 41038808 ~ 41039096 (-) True G67273
AMCG00020992 mRNA downstream 28481 40530158 ~ 40530610 (-) True AMCG00020992
AMCG00020991 mRNA downstream 100628 40454892 ~ 40458463 (-) True AMCG00020991
AMCG00020984 mRNA downstream 283453 40269641 ~ 40275638 (-) True AMCG00020984
AMCG00020985 mRNA downstream 331420 40211543 ~ 40227671 (-) True AMCG00020985
AMCG00020986 mRNA downstream 367055 40171430 ~ 40192036 (-) True AMCG00020986
AMCG00020998 mRNA upstream 100796 40661926 ~ 40729626 (-) True AMCG00020998
AMCG00021004 mRNA upstream 436677 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00021003 mRNA upstream 439050 41000180 ~ 41004194 (-) True AMCG00021003
AMCG00021006 mRNA upstream 531739 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021008 mRNA upstream 805594 41366724 ~ 41367357 (-) True AMCG00021008
TU83728 other downstream 1454224 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 2926515 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 3491299 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 3513152 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 4572395 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 1039271 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile