RNA id: AMCG00020998


Basic Information

Item Value
RNA id AMCG00020998
length 1206
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00020998
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40661926 ~ 40729626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGCCACTTCAGGCGCAGAGCTCACCTTGAGTCACCGAGACGATGTTTGGGAAGCTTCTAATGCCACCACCCCAGTATATTCTGACAACAGCCACCCCACTGCCGCCTCGACCCCCAACGGGAGTCTGTCGTGCGGGGAGCAGATCGACTTCGGCCAGGCGGAGAGGATTATAATCGGGGTATTGCTGACCTTCATTACAGCGGTGACTGTGATGGGCAATACCTTAGTGGTGATAGCGGTGTGCGTGGTTAAGAAACTACGGCAGCCTTCCAACTACTTACTCGTGTCCCTGGCAGTAGCCGACCTGTCGGTAGCGGTGGCCGTCATGCCCTTTGTGATAGTGACGGACCTCACGGGCGGAGAGTGGCTGTTTGGAGAGGTGTTTTGCAACATCTTCATTGGCATGGATGTAATGTGCTGCACCGCATCCATAATGACGCTTTGTGTCATCAGCGTCGACAGGTACCTAGGCATCACCCGTCCCCTCACCTACCCTGCCAGGCAGAACGGGCAGCTGATGGCCAAGATGATTGTGGGTGTGTGGCTGGTGTCGGCTTCCATCACCCTGCCACCCTTCTGCGGCTGGGCACACAATGTCAACACGGCCGGAGTGTGCCTGATCAGCCAAGACTTCAGCTACACCATCTACTCCACTGCCGTGGCATTCTACATCCCCATGGCCGTCATGCTAATCATGTACTACAAGATCTTCAGGGCTGCCCGCAAGAGTGCCGCCAAGCACCGCTTTGCCGGCTTCCCCCGCCGCAATGACCTAGAGACGGTGGCAAGCGAGGGCCTGAAGATGCAGGGGCTGAAGCCTCCCGGGATGGCCGAGGAGTGCGCAGCCCTGTCCCGTCTGTTGAGCCGTGAGCGCAAGAACATCTCCATCTTCAAGCGGGAGCAGAAGGCAGCCACCACCTTGGGCGTGATCGTGGGTGTCTTCTCCATCTGCTGGCTGCCATTCTTCATCCTCTCCACCGCCCGGCCTTTCATCTGTGGCGTCTATTGCAGTTGCATCCCCATCTGGCTGGAGCGCACCCTGCTCTGGCTGGGCTATGCCAACTCTCTCATGAACCCTTTCATATACGCCTTCTTCAACCGCGACCTGCGCTCCACCTACAAGGACCTCTTGCGCTGCCGCTACCGCAACATCAACAGGCGCCTCTCTGCCGTTGGGGTACATGAGGCCCTGAAAGTTTAA

Function

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83939 lncRNA downstream 87070 40573021 ~ 40574856 (-) True G67183
TU83937 lncRNA downstream 89930 40570327 ~ 40571996 (-) True G67181
TU83930 lncRNA downstream 100796 40559091 ~ 40561130 (-) False AMCG00020997
TU83849 lncRNA downstream 370200 40291518 ~ 40291726 (-) True G67103
TU83824 lncRNA downstream 454489 40207179 ~ 40207437 (-) True G67080
TU84007 lncRNA upstream 111477 40841103 ~ 40904117 (-) True G67246
TU84013 lncRNA upstream 171764 40901390 ~ 40902331 (-) True G67252
TU84038 lncRNA upstream 309182 41038808 ~ 41039096 (-) True G67273
TU84042 lncRNA upstream 321858 41051484 ~ 41052538 (-) True G67277
TU84052 lncRNA upstream 373093 41102719 ~ 41103224 (-) True G67283
AMCG00020997 mRNA downstream 21587 40557130 ~ 40640339 (-) True AMCG00020997
AMCG00020992 mRNA downstream 131316 40530158 ~ 40530610 (-) True AMCG00020992
AMCG00020991 mRNA downstream 203463 40454892 ~ 40458463 (-) True AMCG00020991
AMCG00020984 mRNA downstream 386288 40269641 ~ 40275638 (-) True AMCG00020984
AMCG00020985 mRNA downstream 434255 40211543 ~ 40227671 (-) True AMCG00020985
AMCG00021004 mRNA upstream 268181 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00021003 mRNA upstream 270554 41000180 ~ 41004194 (-) True AMCG00021003
AMCG00021006 mRNA upstream 363243 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021008 mRNA upstream 637098 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021012 mRNA upstream 867026 41596652 ~ 41602153 (-) True AMCG00021012
TU83728 other downstream 1557059 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 3029350 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 3594134 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 3615987 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 4675230 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 870775 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile