RNA id: AMCG00021000


Basic Information

Item Value
RNA id AMCG00021000
length 2589
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00021000
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40822569 ~ 40838773 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGGCTTTCATTCTGTTAACAAGAATCCAGTCACTTCATAGAGAGGCACAGGATACCTGAAGACAGATTCGTCAGAGTTCAGAGAGGACGTGTTTGCACTCCAGGTCCTTTCTCTTGAAGTCATGACCCAACGGCCTGGCCATGACTGTACCCAGCTGACAGTGAGCCTAGCCCTGCTGCTCTGCATGCTCTCAGCGGGGAGAGCAGGGGGCACAGAGGTGCCCTCTCCAGCTGAATTCCTCCAGGACTTGCTCTCCCGCTACGGCGACAACGACACCCTCTCTGTGCCCCAGTTGAGATCCCTGCTGGGACGGCTGGATGTGGGGCTGGGAAACAACACTACAGACCGACGTTCACCCAAGACCAACATCTCTAGGTGCCTCTCAACAGAGTCTCTCCTGGCAGCCCACAGTCTGAAGGAGGACTCTCGGGTGGATGGGCAGGGGCTGCAGGTGTTCTGCCCCACCATCCTGCAGCAGCTTCAGACAGGGGCCTGTGGGGTGGAAGCCAAGGAGGAGCAGGCCAAGGACCACCCCCAGGAGGTTGGGCCCACCTCTGCAGAAGTGTGGGGATTTGCTTTTCTCAGTGTGACACTGGTGAGCGCCTTCTCTCTGACTGGCGTGTTCGTGGTGCCCTGCATGAAGACACGCTTCATGCGCAGGGTGTTGATGTATTTCATCGCCCTATCCATCGGCACTCTCTTCTCCACTGCTGTCTTCCAGCTCATCCCAGAGGCATTTGGCTTCAACCCACTGGAAGATTACTATGTGTCCAAGTCGGCTGTGGTCTTCGGGGGCTTTTATCTTTTCTTCTTCACTGAGAAGGTTCTCAAAATGGTGCTGAAGCAAAAAGATGGGAAAGGCCACGGTCACAGTCACTACCCTGCTGAGCGCTACGCCTCCAAATCTGACATGGAGGATGGAGTAATGGAGAAGCTGCAGAACGGAGAGGTGGTGCCGCCTGCCCTCCCCGGGCCTGACGTAGAAGCCCGAGGCCTGAGCGAGGAAGGGAAGGTCCTCACGACCACCATGTCTGCCCAGGACTCTCAGAGTGCCCAGGGTGCATGCTACTGGCTGAAGGGGACTGCGTACTCGGACATCGGCACACTGGCCTGGATGATCACGTTAAGCGATGGGCTGCACAATTTCATAGACGGTCTTGCCATTGGAGCGTCCTTCACTGTGTCAGTCTTCCAGGGCATCAGCACCTCGGTGGCCATCCTGTGTGAGGAGTTCCCACACGAGCTTGGCGACTTTGTGATTCTGCTGAATGCAGGTATGAGTATTCAGCAAGCTCTGTTCTTTAACTTCATCTCCGCCTGCTGTTGTTATCTGGGCATGGGCTTCGGGATCCTTGCCGGCAGCCACTTCTCTGCCAACTGGATCTTTGCCCTGGCAGGGGGCATGTTCCTCTACATTGCCCTGGCAGACATGTTCCCTGAAATGAATGAGGTCAGTAAGGAAGAGGAAGGAGGGGTTGGCAGCTCCTTGGTGAGCTTTGCCATCCAGAATGCAGGCTTGCTGACTGGCTTTATCATCATGCTGCTTCTCACCATGTATTCGGGGCAGATACAGCTGGGATAGACCTGGGCTCAGGAGGGGCTCTGACTTTGGGACATCACACACCAGCCAGCAGGGCGCCTGGCCGGGCCTGGTCCCATCTGCCTAACTACCTTCTCTATGACCTGAACCTTTTctccaaaattattattattattattattattattattattattattattattattacttcctTTATACACTGCCCTAGAGATTCTTCAGCTCCAGAGGTCTACTTAAGCTACTGGAAATTGGATCATGGTGTATAAACGCTCCATGGAAACCTAATGTGGTGTTACAGAGTTATGCGAATGTCTGCTGGGTTTTAGTGTTTTGACAGGCTGTGATTTTGTAACCCAGCTTCCGGCAGAACAGCTTAAGAGGTTTGAGAGAACACAATCGCAGCTCTGCAAGTTCCGACGAATTCTCTTCACAGCTGTTTGGTCTAATGTCCGAGTGTAACCATGCTTCTGCAGTGCTCCAGCAAAGCTTCTCTGCTCCCATCCTATGAAGACTCAGGCTTTGTACTTCAACTGAGCCTTGACGATGTCTGGTTGCCATGGAGTATTAGATTATAATGGCCCTCGTTCACAAATGGAGGCCTTGTTTGTCAGTGAGCAAGTTTGGAAAGaccagcaaaaacaaatctctggGACTGAAACAAAGACCAAATACAGGCTGTTCTGTAGAGATGGCTTTTTTGTTGGGGGgtcctttttgtttatttgttgtttattttgtagctCTTCGCTGCCATAGCTTTACATtttggggcttttttttttttcataattgcTGCTTTGATGCAATTGCTTTTGTATACAGTGTGTCTCGTGTAGGTCTGCGGCTATTGCTAAGCCCTAAAGCACATTTGTCTGCTTGTGTGTTGTACAGCTAAAATTTGAAATGATGCAAGTGATATCTTCCAGGGAGAAGGAATCTAATTTTAGGGCTCTTGtcaagattaattaattaattaatattgtgtgtaggtgtgtgtgcataattacaataaaatactgaat

Function

GO: NA

KEGG:

id description
K14720 SLC39A14, ZIP14; solute carrier family 39 (zinc transporter), member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83965 lncRNA upstream 31098 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA upstream 31098 40786685 ~ 40791471 (+) False G67207
TU83938 lncRNA upstream 247713 40573554 ~ 40574856 (+) True G67182
TU83936 lncRNA upstream 250847 40570327 ~ 40571722 (+) True G67180
TU83931 lncRNA upstream 252354 40564202 ~ 40570215 (+) True AMCG00020993
TU83981 lncRNA downstream 111326 40950099 ~ 40965912 (+) True G67221
TU84037 lncRNA downstream 200081 41038854 ~ 41039096 (+) True G67272
TU84078 lncRNA downstream 465414 41304187 ~ 41305221 (+) True G67309
TU84079 lncRNA downstream 493493 41332266 ~ 41397674 (+) True G67310
TU84093 lncRNA downstream 668834 41507607 ~ 41508101 (+) True G67322
AMCG00020999 mRNA upstream 23461 40758497 ~ 40799108 (+) True AMCG00020999
AMCG00020993 mRNA upstream 254537 40555966 ~ 40568032 (+) False AMCG00020993
AMCG00020996 mRNA upstream 267913 40544090 ~ 40554656 (+) True AMCG00020996
AMCG00020995 mRNA upstream 292515 40490686 ~ 40530054 (+) True AMCG00020995
AMCG00020994 mRNA upstream 365797 40437338 ~ 40456772 (+) True AMCG00020994
AMCG00021002 mRNA downstream 71662 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021001 mRNA downstream 85674 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021005 mRNA downstream 212772 41051545 ~ 41062527 (+) False AMCG00021005
AMCG00021007 mRNA downstream 252460 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021010 mRNA downstream 372658 41211431 ~ 41212049 (+) True AMCG00021010
TU83857 other upstream 500748 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 3905133 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4566058 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 4914167 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 5072215 35747225 ~ 35750354 (+) True AMCG00020874
TU84041 other downstream 212699 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 759450 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 1214157 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1587338 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile